Hb_004324_340

Information

Type -
Description -
Location Contig4324: 219865-222488
Sequence    

Annotation

kegg
ID rcu:RCOM_1581330
description hypothetical protein
nr
ID XP_002513604.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIN5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42338: 215378-219438 , PASA_asmbl_42340: 219763-222470
cDNA
(Sanger)
(ID:Location)		 020_G03.ab1: 219971-222329

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_173953_010 0.0620097423 - - hypothetical protein RCOM_1267370 [Ricinus communis]
3 Hb_001610_110 0.0765791656 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
4 Hb_001623_140 0.091487447 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
5 Hb_001288_080 0.094411404 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
6 Hb_001720_010 0.0947071117 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_005928_110 0.0949959119 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
8 Hb_009615_150 0.0972443201 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
9 Hb_000567_210 0.0999324882 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
10 Hb_001135_020 0.1048331073 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
11 Hb_000621_080 0.1058167295 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002495_070 0.1066751296 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
13 Hb_002150_080 0.1082007833 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_001168_040 0.1088576025 - - -
15 Hb_001828_200 0.1091407622 - - ribosomal protein L13 [Populus trichocarpa]
16 Hb_000224_060 0.1149133861 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
17 Hb_000032_620 0.1158763641 - - hypothetical protein RCOM_1311830 [Ricinus communis]
18 Hb_002027_260 0.1172062634 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
19 Hb_054865_090 0.1180538342 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
20 Hb_000798_060 0.1184173601 transcription factor TF Family: PHD -

Gene co-expression network

sample Hb_004324_340 Hb_004324_340 Hb_173953_010 Hb_173953_010 Hb_004324_340--Hb_173953_010 Hb_001610_110 Hb_001610_110 Hb_004324_340--Hb_001610_110 Hb_001623_140 Hb_001623_140 Hb_004324_340--Hb_001623_140 Hb_001288_080 Hb_001288_080 Hb_004324_340--Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_004324_340--Hb_001720_010 Hb_005928_110 Hb_005928_110 Hb_004324_340--Hb_005928_110 Hb_173953_010--Hb_001610_110 Hb_000342_110 Hb_000342_110 Hb_173953_010--Hb_000342_110 Hb_009615_150 Hb_009615_150 Hb_173953_010--Hb_009615_150 Hb_000621_080 Hb_000621_080 Hb_173953_010--Hb_000621_080 Hb_173953_010--Hb_001720_010 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_001610_110--Hb_001288_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_001168_040 Hb_001168_040 Hb_001623_140--Hb_001168_040 Hb_001623_140--Hb_001288_080 Hb_001623_140--Hb_001720_010 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_001288_080--Hb_001720_010 Hb_001288_080--Hb_052764_050 Hb_001288_080--Hb_001168_040 Hb_001720_010--Hb_001610_110 Hb_001720_010--Hb_001168_040 Hb_000244_300 Hb_000244_300 Hb_001720_010--Hb_000244_300 Hb_000109_160 Hb_000109_160 Hb_005928_110--Hb_000109_160 Hb_005928_110--Hb_009615_150 Hb_005928_110--Hb_001610_110 Hb_005928_110--Hb_086639_070 Hb_003994_180 Hb_003994_180 Hb_005928_110--Hb_003994_180 Hb_005928_110--Hb_000621_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
262.274 219.563 66.3891 60.5216 169.399 136.178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
170.9 171.696 102.726 80.0268 18.3024

CAGE analysis