Hb_004324_390

Information

Type -
Description -
Location Contig4324: 260158-265335
Sequence    

Annotation

kegg
ID rcu:RCOM_1581420
description pyruvate kinase, putative (EC:2.7.1.40)
nr
ID XP_012090144.1
description PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
swissprot
ID Q9FLW9
description Plastidial pyruvate kinase 2 OS=Arabidopsis thaliana GN=PKP2 PE=1 SV=1
trembl
ID A0A067JEA2
description Pyruvate kinase OS=Jatropha curcas GN=JCGZ_26022 PE=3 SV=1
Gene Ontology
ID GO:0000287
description plastidial pyruvate kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42353: 260172-265227
cDNA
(Sanger)
(ID:Location)		 028_L02.ab1: 264110-265152

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_390 0.0 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
2 Hb_000103_120 0.1033514656 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
3 Hb_000890_130 0.1085835994 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
4 Hb_000340_130 0.1106859287 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
5 Hb_002686_080 0.1253358564 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
6 Hb_160256_010 0.1265096687 - - -
7 Hb_000261_330 0.1265316711 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
8 Hb_005333_060 0.1285022966 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
9 Hb_002687_120 0.1298272643 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
10 Hb_006775_120 0.132778497 - - exonuclease-like protein [Oryza sativa Japonica Group]
11 Hb_000152_790 0.1330679669 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
12 Hb_001517_050 0.1339733929 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
13 Hb_000007_390 0.1352884964 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
14 Hb_021732_010 0.1353088297 - - biotin carboxylase [Vernicia fordii]
15 Hb_006816_090 0.135908682 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
16 Hb_001053_190 0.1369750976 - - ADP,ATP carrier protein, putative [Ricinus communis]
17 Hb_011386_050 0.1384399919 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
18 Hb_000207_300 0.138924596 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
19 Hb_002485_030 0.1391892138 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
20 Hb_002284_210 0.1396718533 - - PREDICTED: protein canopy-1 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_390 Hb_004324_390 Hb_000103_120 Hb_000103_120 Hb_004324_390--Hb_000103_120 Hb_000890_130 Hb_000890_130 Hb_004324_390--Hb_000890_130 Hb_000340_130 Hb_000340_130 Hb_004324_390--Hb_000340_130 Hb_002686_080 Hb_002686_080 Hb_004324_390--Hb_002686_080 Hb_160256_010 Hb_160256_010 Hb_004324_390--Hb_160256_010 Hb_000261_330 Hb_000261_330 Hb_004324_390--Hb_000261_330 Hb_002485_030 Hb_002485_030 Hb_000103_120--Hb_002485_030 Hb_000154_050 Hb_000154_050 Hb_000103_120--Hb_000154_050 Hb_000331_140 Hb_000331_140 Hb_000103_120--Hb_000331_140 Hb_002783_220 Hb_002783_220 Hb_000103_120--Hb_002783_220 Hb_004032_370 Hb_004032_370 Hb_000103_120--Hb_004032_370 Hb_002687_120 Hb_002687_120 Hb_000890_130--Hb_002687_120 Hb_003119_060 Hb_003119_060 Hb_000890_130--Hb_003119_060 Hb_000890_130--Hb_002686_080 Hb_000028_520 Hb_000028_520 Hb_000890_130--Hb_000028_520 Hb_000270_680 Hb_000270_680 Hb_000890_130--Hb_000270_680 Hb_002304_150 Hb_002304_150 Hb_000890_130--Hb_002304_150 Hb_005975_010 Hb_005975_010 Hb_000340_130--Hb_005975_010 Hb_011386_050 Hb_011386_050 Hb_000340_130--Hb_011386_050 Hb_005649_100 Hb_005649_100 Hb_000340_130--Hb_005649_100 Hb_000340_130--Hb_002686_080 Hb_000012_270 Hb_000012_270 Hb_000340_130--Hb_000012_270 Hb_000002_120 Hb_000002_120 Hb_000340_130--Hb_000002_120 Hb_001053_190 Hb_001053_190 Hb_002686_080--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_002686_080--Hb_003540_050 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_016448_010 Hb_016448_010 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030 Hb_001195_640 Hb_001195_640 Hb_160256_010--Hb_001195_640 Hb_000920_010 Hb_000920_010 Hb_160256_010--Hb_000920_010 Hb_000181_060 Hb_000181_060 Hb_160256_010--Hb_000181_060 Hb_002284_210 Hb_002284_210 Hb_160256_010--Hb_002284_210 Hb_030545_010 Hb_030545_010 Hb_160256_010--Hb_030545_010 Hb_000140_440 Hb_000140_440 Hb_160256_010--Hb_000140_440 Hb_006405_050 Hb_006405_050 Hb_000261_330--Hb_006405_050 Hb_000022_200 Hb_000022_200 Hb_000261_330--Hb_000022_200 Hb_001085_260 Hb_001085_260 Hb_000261_330--Hb_001085_260 Hb_000300_200 Hb_000300_200 Hb_000261_330--Hb_000300_200 Hb_007017_080 Hb_007017_080 Hb_000261_330--Hb_007017_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3945 5.15364 55.4972 26.3581 10.6061 15.8916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1553 9.6345 13.3847 17.2645 18.1843

CAGE analysis