Hb_004324_400

Information

Type -
Description -
Location Contig4324: 266015-280180
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05970g
description hypothetical protein
nr
ID XP_012090145.1
description PREDICTED: protein timeless homolog [Jatropha curcas]
swissprot
ID Q9UNS1
description Protein timeless homolog OS=Homo sapiens GN=TIMELESS PE=1 SV=2
trembl
ID A0A067JHB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26024 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42354: 266262-266936 , PASA_asmbl_42355: 268832-269516 , PASA_asmbl_42357: 271410-274125 , PASA_asmbl_42358: 275887-276352 , PASA_asmbl_42359: 276382-277117 , PASA_asmbl_42360: 277167-279531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_400 0.0 - - PREDICTED: protein timeless homolog [Jatropha curcas]
2 Hb_002046_110 0.0974229181 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
3 Hb_000270_510 0.1003354015 - - hypothetical protein CISIN_1g008173mg [Citrus sinensis]
4 Hb_145880_010 0.1036002646 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_006588_200 0.1041202162 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
6 Hb_003528_010 0.1059998847 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
7 Hb_030982_030 0.1070197342 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
8 Hb_009083_070 0.1083784405 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
9 Hb_005306_160 0.1106633677 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
10 Hb_006573_040 0.1138984809 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000600_060 0.1152365775 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
12 Hb_005918_010 0.1164668388 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
13 Hb_007982_080 0.1197416204 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
14 Hb_002675_110 0.1219211743 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
15 Hb_000879_180 0.1226128625 - - XPA-binding protein, putative [Ricinus communis]
16 Hb_000513_090 0.1231530997 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
17 Hb_004096_180 0.1233762555 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
18 Hb_000185_070 0.1235645718 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005137_040 0.1236376007 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
20 Hb_008160_030 0.1242038883 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004324_400 Hb_004324_400 Hb_002046_110 Hb_002046_110 Hb_004324_400--Hb_002046_110 Hb_000270_510 Hb_000270_510 Hb_004324_400--Hb_000270_510 Hb_145880_010 Hb_145880_010 Hb_004324_400--Hb_145880_010 Hb_006588_200 Hb_006588_200 Hb_004324_400--Hb_006588_200 Hb_003528_010 Hb_003528_010 Hb_004324_400--Hb_003528_010 Hb_030982_030 Hb_030982_030 Hb_004324_400--Hb_030982_030 Hb_009083_070 Hb_009083_070 Hb_002046_110--Hb_009083_070 Hb_002325_040 Hb_002325_040 Hb_002046_110--Hb_002325_040 Hb_005306_160 Hb_005306_160 Hb_002046_110--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_002046_110--Hb_000928_220 Hb_001135_120 Hb_001135_120 Hb_002046_110--Hb_001135_120 Hb_000076_160 Hb_000076_160 Hb_002046_110--Hb_000076_160 Hb_003050_390 Hb_003050_390 Hb_000270_510--Hb_003050_390 Hb_000270_510--Hb_003528_010 Hb_000270_520 Hb_000270_520 Hb_000270_510--Hb_000270_520 Hb_001135_130 Hb_001135_130 Hb_000270_510--Hb_001135_130 Hb_000035_200 Hb_000035_200 Hb_000270_510--Hb_000035_200 Hb_145880_010--Hb_009083_070 Hb_001318_020 Hb_001318_020 Hb_145880_010--Hb_001318_020 Hb_184798_080 Hb_184798_080 Hb_145880_010--Hb_184798_080 Hb_006922_010 Hb_006922_010 Hb_145880_010--Hb_006922_010 Hb_008160_030 Hb_008160_030 Hb_145880_010--Hb_008160_030 Hb_001205_200 Hb_001205_200 Hb_145880_010--Hb_001205_200 Hb_003185_010 Hb_003185_010 Hb_006588_200--Hb_003185_010 Hb_001780_020 Hb_001780_020 Hb_006588_200--Hb_001780_020 Hb_003549_150 Hb_003549_150 Hb_006588_200--Hb_003549_150 Hb_006588_200--Hb_003528_010 Hb_034552_030 Hb_034552_030 Hb_006588_200--Hb_034552_030 Hb_003994_230 Hb_003994_230 Hb_006588_200--Hb_003994_230 Hb_032920_060 Hb_032920_060 Hb_003528_010--Hb_032920_060 Hb_000185_070 Hb_000185_070 Hb_003528_010--Hb_000185_070 Hb_003528_010--Hb_003549_150 Hb_010381_090 Hb_010381_090 Hb_003528_010--Hb_010381_090 Hb_000205_300 Hb_000205_300 Hb_003528_010--Hb_000205_300 Hb_000963_040 Hb_000963_040 Hb_030982_030--Hb_000963_040 Hb_003119_090 Hb_003119_090 Hb_030982_030--Hb_003119_090 Hb_016347_020 Hb_016347_020 Hb_030982_030--Hb_016347_020 Hb_001227_130 Hb_001227_130 Hb_030982_030--Hb_001227_130 Hb_000600_060 Hb_000600_060 Hb_030982_030--Hb_000600_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44862 1.36291 1.78812 1.54947 1.24286 0.881875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.800237 0.778451 1.27631 1.34083 0.262323

CAGE analysis