Hb_004326_010

Information

Type -
Description -
Location Contig4326: 5688-7496
Sequence    

Annotation

kegg
ID rcu:RCOM_0814060
description cationic amino acid transporter, putative
nr
ID XP_002518795.1
description cationic amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9SHH0
description Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=2 SV=1
trembl
ID B9RY28
description Cationic amino acid transporter, putative OS=Ricinus communis GN=RCOM_0814060 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cationic amino acid transporter vacuolar

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004326_010 0.0 - - cationic amino acid transporter, putative [Ricinus communis]
2 Hb_007537_030 0.0966612923 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
3 Hb_000570_020 0.0999644 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
4 Hb_000157_140 0.1052910128 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_000181_460 0.1077939147 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
6 Hb_000120_740 0.1099495019 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
7 Hb_001105_130 0.1109371652 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
8 Hb_000941_120 0.1114363155 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
9 Hb_000768_150 0.1138276155 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
10 Hb_012053_020 0.1166565189 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
11 Hb_007317_020 0.1171364285 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
12 Hb_001473_170 0.1178991292 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
13 Hb_002687_160 0.1185876883 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
14 Hb_028639_030 0.1191647338 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
15 Hb_005694_060 0.1205849078 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
16 Hb_003783_050 0.1209410354 - - conserved hypothetical protein [Ricinus communis]
17 Hb_036388_010 0.1214360278 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
18 Hb_000152_710 0.1216661418 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
19 Hb_000494_030 0.1233880567 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
20 Hb_000283_140 0.1235993024 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004326_010 Hb_004326_010 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_004326_010--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_004326_010--Hb_000157_140 Hb_000181_460 Hb_000181_460 Hb_004326_010--Hb_000181_460 Hb_000120_740 Hb_000120_740 Hb_004326_010--Hb_000120_740 Hb_001105_130 Hb_001105_130 Hb_004326_010--Hb_001105_130 Hb_007537_030--Hb_000570_020 Hb_007537_030--Hb_000157_140 Hb_004030_060 Hb_004030_060 Hb_007537_030--Hb_004030_060 Hb_018845_010 Hb_018845_010 Hb_007537_030--Hb_018845_010 Hb_021576_070 Hb_021576_070 Hb_007537_030--Hb_021576_070 Hb_004943_040 Hb_004943_040 Hb_000570_020--Hb_004943_040 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_000283_140 Hb_000283_140 Hb_000570_020--Hb_000283_140 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_000157_140--Hb_004030_060 Hb_007229_050 Hb_007229_050 Hb_000157_140--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_000157_140--Hb_007317_020 Hb_011174_080 Hb_011174_080 Hb_000157_140--Hb_011174_080 Hb_000157_140--Hb_000570_020 Hb_005016_010 Hb_005016_010 Hb_000181_460--Hb_005016_010 Hb_010390_010 Hb_010390_010 Hb_000181_460--Hb_010390_010 Hb_000110_060 Hb_000110_060 Hb_000181_460--Hb_000110_060 Hb_177215_030 Hb_177215_030 Hb_000181_460--Hb_177215_030 Hb_003044_080 Hb_003044_080 Hb_000181_460--Hb_003044_080 Hb_036388_010 Hb_036388_010 Hb_000120_740--Hb_036388_010 Hb_000120_740--Hb_001105_130 Hb_035834_010 Hb_035834_010 Hb_000120_740--Hb_035834_010 Hb_000590_070 Hb_000590_070 Hb_000120_740--Hb_000590_070 Hb_009193_010 Hb_009193_010 Hb_000120_740--Hb_009193_010 Hb_002805_090 Hb_002805_090 Hb_001105_130--Hb_002805_090 Hb_011310_050 Hb_011310_050 Hb_001105_130--Hb_011310_050 Hb_000679_040 Hb_000679_040 Hb_001105_130--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_001105_130--Hb_010381_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.619551 2.37327 4.65428 8.85808 0.651028 1.03828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.908731 1.09234 2.32836 4.72199 7.40593

CAGE analysis