Hb_004328_040

Information

Type -
Description -
Location Contig4328: 123152-128338
Sequence    

Annotation

kegg
ID vvi:100246536
description wall-associated receptor kinase-like 8
nr
ID XP_002264469.1
description PREDICTED: wall-associated receptor kinase-like 8 [Vitis vinifera]
swissprot
ID Q9LMP1
description Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1
trembl
ID F6GVX1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0089g01150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42370: 123188-123943 , PASA_asmbl_42371: 124152-128324 , PASA_asmbl_42372: 126091-126584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004328_040 0.0 - - PREDICTED: wall-associated receptor kinase-like 8 [Vitis vinifera]
2 Hb_002577_010 0.1178036344 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
3 Hb_001004_110 0.1450116144 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000011_400 0.1678262201 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
5 Hb_000318_330 0.1695991571 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
6 Hb_001123_320 0.1741707928 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
7 Hb_000676_190 0.1822179972 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
8 Hb_007747_140 0.1830618981 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
9 Hb_004200_020 0.1862061276 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
10 Hb_001840_090 0.1866369338 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
11 Hb_003994_060 0.187293161 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
12 Hb_011056_020 0.1880000687 transcription factor TF Family: ERF AP2 domain transcription factor RAP2.3, putative [Ricinus communis]
13 Hb_000076_140 0.1900520819 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_024468_020 0.1915140584 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_006114_010 0.1941821876 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
16 Hb_006824_050 0.1947496934 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Jatropha curcas]
17 Hb_109002_020 0.1959818624 - - PREDICTED: CTP synthase-like [Jatropha curcas]
18 Hb_086639_030 0.196632315 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_001214_090 0.197049151 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
20 Hb_001663_050 0.19711747 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004328_040 Hb_004328_040 Hb_002577_010 Hb_002577_010 Hb_004328_040--Hb_002577_010 Hb_001004_110 Hb_001004_110 Hb_004328_040--Hb_001004_110 Hb_000011_400 Hb_000011_400 Hb_004328_040--Hb_000011_400 Hb_000318_330 Hb_000318_330 Hb_004328_040--Hb_000318_330 Hb_001123_320 Hb_001123_320 Hb_004328_040--Hb_001123_320 Hb_000676_190 Hb_000676_190 Hb_004328_040--Hb_000676_190 Hb_074783_010 Hb_074783_010 Hb_002577_010--Hb_074783_010 Hb_003647_060 Hb_003647_060 Hb_002577_010--Hb_003647_060 Hb_000007_140 Hb_000007_140 Hb_002577_010--Hb_000007_140 Hb_004200_020 Hb_004200_020 Hb_002577_010--Hb_004200_020 Hb_165669_010 Hb_165669_010 Hb_002577_010--Hb_165669_010 Hb_010029_020 Hb_010029_020 Hb_001004_110--Hb_010029_020 Hb_010407_170 Hb_010407_170 Hb_001004_110--Hb_010407_170 Hb_004705_140 Hb_004705_140 Hb_001004_110--Hb_004705_140 Hb_001004_110--Hb_000676_190 Hb_134469_010 Hb_134469_010 Hb_001004_110--Hb_134469_010 Hb_000011_400--Hb_001123_320 Hb_009620_020 Hb_009620_020 Hb_000011_400--Hb_009620_020 Hb_001840_090 Hb_001840_090 Hb_000011_400--Hb_001840_090 Hb_000363_210 Hb_000363_210 Hb_000011_400--Hb_000363_210 Hb_000225_060 Hb_000225_060 Hb_000011_400--Hb_000225_060 Hb_003994_060 Hb_003994_060 Hb_000011_400--Hb_003994_060 Hb_006824_050 Hb_006824_050 Hb_000318_330--Hb_006824_050 Hb_025557_030 Hb_025557_030 Hb_000318_330--Hb_025557_030 Hb_004607_030 Hb_004607_030 Hb_000318_330--Hb_004607_030 Hb_004846_070 Hb_004846_070 Hb_000318_330--Hb_004846_070 Hb_001969_090 Hb_001969_090 Hb_000318_330--Hb_001969_090 Hb_002878_020 Hb_002878_020 Hb_000318_330--Hb_002878_020 Hb_010883_090 Hb_010883_090 Hb_001123_320--Hb_010883_090 Hb_006114_010 Hb_006114_010 Hb_001123_320--Hb_006114_010 Hb_001123_320--Hb_003994_060 Hb_000840_250 Hb_000840_250 Hb_001123_320--Hb_000840_250 Hb_000483_260 Hb_000483_260 Hb_001123_320--Hb_000483_260 Hb_001018_050 Hb_001018_050 Hb_000676_190--Hb_001018_050 Hb_000347_440 Hb_000347_440 Hb_000676_190--Hb_000347_440 Hb_000140_480 Hb_000140_480 Hb_000676_190--Hb_000140_480 Hb_000152_660 Hb_000152_660 Hb_000676_190--Hb_000152_660 Hb_006913_010 Hb_006913_010 Hb_000676_190--Hb_006913_010 Hb_003044_030 Hb_003044_030 Hb_000676_190--Hb_003044_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.631 9.97963 3.53798 6.99093 4.5788 2.98729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92 16.3283 19.4951 21.0955 3.82695

CAGE analysis