Hb_004329_030

Information

Type -
Description -
Location Contig4329: 49052-53074
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15250g
description POPTRDRAFT_729244; peroxidase family protein
nr
ID KDP45728.1
description hypothetical protein JCGZ_17335 [Jatropha curcas]
swissprot
ID A7NY33
description Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1
trembl
ID A0A067LEV2
description Peroxidase OS=Jatropha curcas GN=JCGZ_17335 PE=3 SV=1
Gene Ontology
ID GO:0004601
description peroxidase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42373: 48981-53049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004329_030 0.0 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
2 Hb_001051_020 0.0501409529 - - hypothetical protein L484_008044 [Morus notabilis]
3 Hb_034299_010 0.0587600295 - - F-box and wd40 domain protein, putative [Ricinus communis]
4 Hb_002081_140 0.0729904201 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002960_180 0.078084959 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
6 Hb_094074_010 0.0846668509 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
7 Hb_002929_040 0.0882836421 - - zinc finger protein, putative [Ricinus communis]
8 Hb_003253_030 0.0889683624 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
9 Hb_002675_220 0.0899344752 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
10 Hb_002042_220 0.0946537777 - - Kinesin heavy chain, putative [Ricinus communis]
11 Hb_004197_030 0.0953550265 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
12 Hb_012049_010 0.1056532238 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
13 Hb_000007_290 0.1058808627 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
14 Hb_099263_010 0.1074806865 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
15 Hb_002250_040 0.1084527289 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
16 Hb_002010_040 0.1085937251 - - -
17 Hb_000940_120 0.1115701327 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
18 Hb_001104_070 0.1123160185 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
19 Hb_000844_060 0.1123318376 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
20 Hb_002445_020 0.1125812962 - - -

Gene co-expression network

sample Hb_004329_030 Hb_004329_030 Hb_001051_020 Hb_001051_020 Hb_004329_030--Hb_001051_020 Hb_034299_010 Hb_034299_010 Hb_004329_030--Hb_034299_010 Hb_002081_140 Hb_002081_140 Hb_004329_030--Hb_002081_140 Hb_002960_180 Hb_002960_180 Hb_004329_030--Hb_002960_180 Hb_094074_010 Hb_094074_010 Hb_004329_030--Hb_094074_010 Hb_002929_040 Hb_002929_040 Hb_004329_030--Hb_002929_040 Hb_001051_020--Hb_034299_010 Hb_002042_220 Hb_002042_220 Hb_001051_020--Hb_002042_220 Hb_000007_290 Hb_000007_290 Hb_001051_020--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_001051_020--Hb_002010_040 Hb_001051_020--Hb_002081_140 Hb_099263_010 Hb_099263_010 Hb_034299_010--Hb_099263_010 Hb_034299_010--Hb_002960_180 Hb_034299_010--Hb_000007_290 Hb_034299_010--Hb_002010_040 Hb_000997_370 Hb_000997_370 Hb_002081_140--Hb_000997_370 Hb_002675_220 Hb_002675_220 Hb_002081_140--Hb_002675_220 Hb_003253_030 Hb_003253_030 Hb_002081_140--Hb_003253_030 Hb_002081_140--Hb_034299_010 Hb_002960_180--Hb_094074_010 Hb_002960_180--Hb_002929_040 Hb_002960_180--Hb_099263_010 Hb_002960_180--Hb_002042_220 Hb_005991_030 Hb_005991_030 Hb_002960_180--Hb_005991_030 Hb_004197_030 Hb_004197_030 Hb_094074_010--Hb_004197_030 Hb_094074_010--Hb_002042_220 Hb_094074_010--Hb_002929_040 Hb_094074_010--Hb_034299_010 Hb_094074_010--Hb_099263_010 Hb_002929_040--Hb_005991_030 Hb_002929_040--Hb_034299_010 Hb_002929_040--Hb_099263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27688 22.5897 139.216 0 0.0562348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.51676 473.224

CAGE analysis