Hb_004330_080

Information

Type -
Description -
Location Contig4330: 90747-97741
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002088mg
description hypothetical protein
nr
ID XP_012091293.1
description PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
swissprot
ID Q6R2J8
description Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1
trembl
ID A0A067JDA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21174 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein strubbelig-receptor family 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42383: 90791-97915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004330_080 0.0 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
2 Hb_029510_100 0.1063321943 - - scab resistance family protein [Populus trichocarpa]
3 Hb_001014_190 0.1110261326 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
4 Hb_135757_020 0.1194544433 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
5 Hb_004094_020 0.1304560905 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
6 Hb_000029_440 0.1335937224 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
7 Hb_030565_110 0.1459783293 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
8 Hb_001616_070 0.1463694561 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
9 Hb_069619_010 0.1511998666 - - Aspartic proteinase precursor, putative [Ricinus communis]
10 Hb_003683_130 0.1531283857 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
11 Hb_183867_010 0.154563 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
12 Hb_000009_060 0.1557470602 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
13 Hb_001021_010 0.1559602683 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
14 Hb_010872_040 0.1569485882 - - hypothetical protein F775_31993 [Aegilops tauschii]
15 Hb_000221_240 0.157504525 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
16 Hb_000824_050 0.1580336193 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
17 Hb_019280_020 0.1611657107 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
18 Hb_002631_130 0.1616170762 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
19 Hb_000494_030 0.1632427509 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
20 Hb_002151_060 0.1644314203 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]

Gene co-expression network

sample Hb_004330_080 Hb_004330_080 Hb_029510_100 Hb_029510_100 Hb_004330_080--Hb_029510_100 Hb_001014_190 Hb_001014_190 Hb_004330_080--Hb_001014_190 Hb_135757_020 Hb_135757_020 Hb_004330_080--Hb_135757_020 Hb_004094_020 Hb_004094_020 Hb_004330_080--Hb_004094_020 Hb_000029_440 Hb_000029_440 Hb_004330_080--Hb_000029_440 Hb_030565_110 Hb_030565_110 Hb_004330_080--Hb_030565_110 Hb_029510_100--Hb_001014_190 Hb_019280_020 Hb_019280_020 Hb_029510_100--Hb_019280_020 Hb_029510_100--Hb_004094_020 Hb_000120_230 Hb_000120_230 Hb_029510_100--Hb_000120_230 Hb_012362_030 Hb_012362_030 Hb_029510_100--Hb_012362_030 Hb_005970_010 Hb_005970_010 Hb_001014_190--Hb_005970_010 Hb_006683_020 Hb_006683_020 Hb_001014_190--Hb_006683_020 Hb_000683_050 Hb_000683_050 Hb_001014_190--Hb_000683_050 Hb_001014_190--Hb_019280_020 Hb_135757_020--Hb_004094_020 Hb_000221_240 Hb_000221_240 Hb_135757_020--Hb_000221_240 Hb_001021_010 Hb_001021_010 Hb_135757_020--Hb_001021_010 Hb_000824_050 Hb_000824_050 Hb_135757_020--Hb_000824_050 Hb_135757_020--Hb_019280_020 Hb_183867_010 Hb_183867_010 Hb_004094_020--Hb_183867_010 Hb_005914_140 Hb_005914_140 Hb_004094_020--Hb_005914_140 Hb_000494_030 Hb_000494_030 Hb_004094_020--Hb_000494_030 Hb_001006_270 Hb_001006_270 Hb_004094_020--Hb_001006_270 Hb_003994_220 Hb_003994_220 Hb_004094_020--Hb_003994_220 Hb_000029_440--Hb_030565_110 Hb_002072_010 Hb_002072_010 Hb_000029_440--Hb_002072_010 Hb_000254_070 Hb_000254_070 Hb_000029_440--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000029_440--Hb_000003_310 Hb_069619_010 Hb_069619_010 Hb_000029_440--Hb_069619_010 Hb_030565_110--Hb_002072_010 Hb_003371_190 Hb_003371_190 Hb_030565_110--Hb_003371_190 Hb_030565_110--Hb_000003_310 Hb_000244_260 Hb_000244_260 Hb_030565_110--Hb_000244_260 Hb_030565_110--Hb_000254_070 Hb_002367_110 Hb_002367_110 Hb_030565_110--Hb_002367_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.70006 4.45113 6.81142 27.3984 3.3779 3.04064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08825 2.05627 4.81457 23.3662 7.32863

CAGE analysis