Hb_004330_090

Information

Type -
Description -
Location Contig4330: 98768-103961
Sequence    

Annotation

kegg
ID rcu:RCOM_0903330
description hypothetical protein
nr
ID XP_012091297.1
description PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JAD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21173 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42383: 90791-97915 , PASA_asmbl_42385: 101758-103742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004330_090 0.0 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
2 Hb_002553_060 0.0725233858 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
3 Hb_000137_040 0.0832273503 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
4 Hb_001021_150 0.0853471219 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
5 Hb_000227_170 0.0885521866 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_000676_120 0.0888764911 - - -
7 Hb_189216_020 0.0910393845 - - PREDICTED: translin [Jatropha curcas]
8 Hb_000723_040 0.0914201947 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_000976_120 0.0920030173 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
10 Hb_000075_040 0.0922666791 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
11 Hb_002893_070 0.0922674224 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
12 Hb_002592_060 0.0923505642 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022693_140 0.0940594631 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
14 Hb_000181_130 0.0942530745 - - ATP binding protein, putative [Ricinus communis]
15 Hb_007192_070 0.0945658704 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
16 Hb_007163_070 0.096441846 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
17 Hb_002811_130 0.0966240693 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
18 Hb_003440_060 0.0971869503 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
19 Hb_001946_400 0.0973538587 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
20 Hb_000212_440 0.0991382066 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004330_090 Hb_004330_090 Hb_002553_060 Hb_002553_060 Hb_004330_090--Hb_002553_060 Hb_000137_040 Hb_000137_040 Hb_004330_090--Hb_000137_040 Hb_001021_150 Hb_001021_150 Hb_004330_090--Hb_001021_150 Hb_000227_170 Hb_000227_170 Hb_004330_090--Hb_000227_170 Hb_000676_120 Hb_000676_120 Hb_004330_090--Hb_000676_120 Hb_189216_020 Hb_189216_020 Hb_004330_090--Hb_189216_020 Hb_001946_400 Hb_001946_400 Hb_002553_060--Hb_001946_400 Hb_002553_060--Hb_001021_150 Hb_001318_280 Hb_001318_280 Hb_002553_060--Hb_001318_280 Hb_008616_050 Hb_008616_050 Hb_002553_060--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_002553_060--Hb_000976_120 Hb_002553_060--Hb_189216_020 Hb_003513_010 Hb_003513_010 Hb_000137_040--Hb_003513_010 Hb_002013_020 Hb_002013_020 Hb_000137_040--Hb_002013_020 Hb_005496_140 Hb_005496_140 Hb_000137_040--Hb_005496_140 Hb_001322_110 Hb_001322_110 Hb_000137_040--Hb_001322_110 Hb_003416_010 Hb_003416_010 Hb_000137_040--Hb_003416_010 Hb_000866_260 Hb_000866_260 Hb_000137_040--Hb_000866_260 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_008847_030 Hb_008847_030 Hb_001021_150--Hb_008847_030 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_001935_100 Hb_001935_100 Hb_000227_170--Hb_001935_100 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_005494_010 Hb_005494_010 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_000676_120--Hb_008616_050 Hb_000676_120--Hb_002553_060 Hb_004545_110 Hb_004545_110 Hb_000676_120--Hb_004545_110 Hb_027380_060 Hb_027380_060 Hb_000676_120--Hb_027380_060 Hb_000676_120--Hb_001318_280 Hb_001232_190 Hb_001232_190 Hb_000676_120--Hb_001232_190 Hb_000948_160 Hb_000948_160 Hb_189216_020--Hb_000948_160 Hb_001470_030 Hb_001470_030 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_002994_030 Hb_002994_030 Hb_189216_020--Hb_002994_030 Hb_189216_020--Hb_001946_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.741021 0.595367 1.37762 1.07035 1.36017 1.23905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17357 1.7991 0.786963 0.949283 1.8557

CAGE analysis