Hb_004333_020

Information

Type -
Description -
Location Contig4333: 41919-44041
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43820g
description hypothetical protein
nr
ID XP_012479950.1
description PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004333_020 0.0 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
2 Hb_005914_070 0.1789646601 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000392_330 0.1810961259 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
4 Hb_003086_130 0.1838432099 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_001369_450 0.1862475957 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_009314_010 0.1993175627 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_000771_130 0.2008554422 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
8 Hb_001894_170 0.2166061352 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
9 Hb_002067_140 0.2188595982 - - -
10 Hb_000161_150 0.2202270444 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
11 Hb_091433_040 0.22192609 - - PREDICTED: josephin-like protein [Jatropha curcas]
12 Hb_003913_080 0.2232120874 - - rpl27A [Hemiselmis andersenii]
13 Hb_000432_050 0.2243933991 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
14 Hb_000227_200 0.2316956971 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
15 Hb_004048_060 0.2347228493 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
16 Hb_012239_100 0.2365500874 - - hypothetical protein VITISV_043897 [Vitis vinifera]
17 Hb_004291_010 0.2407057095 - - (R)-limonene synthase, putative [Ricinus communis]
18 Hb_003754_080 0.2419481346 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
19 Hb_008516_020 0.2429404262 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
20 Hb_002759_240 0.2431641989 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004333_020 Hb_004333_020 Hb_005914_070 Hb_005914_070 Hb_004333_020--Hb_005914_070 Hb_000392_330 Hb_000392_330 Hb_004333_020--Hb_000392_330 Hb_003086_130 Hb_003086_130 Hb_004333_020--Hb_003086_130 Hb_001369_450 Hb_001369_450 Hb_004333_020--Hb_001369_450 Hb_009314_010 Hb_009314_010 Hb_004333_020--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_004333_020--Hb_000771_130 Hb_091433_040 Hb_091433_040 Hb_005914_070--Hb_091433_040 Hb_003052_040 Hb_003052_040 Hb_005914_070--Hb_003052_040 Hb_000227_200 Hb_000227_200 Hb_005914_070--Hb_000227_200 Hb_113906_010 Hb_113906_010 Hb_005914_070--Hb_113906_010 Hb_000111_010 Hb_000111_010 Hb_005914_070--Hb_000111_010 Hb_005914_070--Hb_001369_450 Hb_008516_020 Hb_008516_020 Hb_000392_330--Hb_008516_020 Hb_000392_330--Hb_003086_130 Hb_000375_340 Hb_000375_340 Hb_000392_330--Hb_000375_340 Hb_004048_060 Hb_004048_060 Hb_000392_330--Hb_004048_060 Hb_000392_330--Hb_091433_040 Hb_003086_130--Hb_008516_020 Hb_000995_070 Hb_000995_070 Hb_003086_130--Hb_000995_070 Hb_003086_130--Hb_005914_070 Hb_003086_130--Hb_091433_040 Hb_012545_050 Hb_012545_050 Hb_001369_450--Hb_012545_050 Hb_002067_140 Hb_002067_140 Hb_001369_450--Hb_002067_140 Hb_001776_170 Hb_001776_170 Hb_001369_450--Hb_001776_170 Hb_002759_240 Hb_002759_240 Hb_001369_450--Hb_002759_240 Hb_001511_140 Hb_001511_140 Hb_001369_450--Hb_001511_140 Hb_000979_250 Hb_000979_250 Hb_001369_450--Hb_000979_250 Hb_000161_150 Hb_000161_150 Hb_009314_010--Hb_000161_150 Hb_000432_050 Hb_000432_050 Hb_009314_010--Hb_000432_050 Hb_006816_450 Hb_006816_450 Hb_009314_010--Hb_006816_450 Hb_002756_020 Hb_002756_020 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_009314_010--Hb_000771_130 Hb_000016_190 Hb_000016_190 Hb_000771_130--Hb_000016_190 Hb_000771_130--Hb_000161_150 Hb_000771_130--Hb_000432_050 Hb_005839_110 Hb_005839_110 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126799 0.0716195 0.0683683 0 0 0.0752744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.294173 0.69361 1.08142 0.252549 0

CAGE analysis