Hb_004333_030

Information

Type -
Description -
Location Contig4333: 44509-49584
Sequence    

Annotation

kegg
ID tcc:TCM_015475
description Vacuolar protein sorting 26A isoform 1
nr
ID XP_012084648.1
description PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
swissprot
ID Q9T091
description Vacuolar protein sorting-associated protein 26B OS=Arabidopsis thaliana GN=VPS26B PE=2 SV=2
trembl
ID A0A067K695
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42389: 49079-49250 , PASA_asmbl_42390: 50106-51196
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004333_030 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
2 Hb_030565_040 0.1044798989 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
3 Hb_001623_430 0.1122549235 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
4 Hb_000318_490 0.115863068 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
5 Hb_000896_120 0.1226820755 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
6 Hb_187083_010 0.124792432 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
7 Hb_000106_100 0.1249240023 - - -
8 Hb_002843_210 0.1258629925 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
9 Hb_183086_040 0.1264479114 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
10 Hb_007520_060 0.1272516346 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
11 Hb_000367_210 0.1305222777 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
12 Hb_006718_010 0.1329822419 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
13 Hb_004223_260 0.1331361951 - - hypothetical protein F383_09277 [Gossypium arboreum]
14 Hb_000780_210 0.1354550842 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
15 Hb_001377_380 0.1355906704 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
16 Hb_000635_080 0.1365299875 - - 60S ribosomal protein L17A [Hevea brasiliensis]
17 Hb_003349_070 0.1384434949 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
18 Hb_005914_200 0.139227145 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
19 Hb_002025_300 0.1393902776 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
20 Hb_075359_010 0.1402734973 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_004333_030 Hb_004333_030 Hb_030565_040 Hb_030565_040 Hb_004333_030--Hb_030565_040 Hb_001623_430 Hb_001623_430 Hb_004333_030--Hb_001623_430 Hb_000318_490 Hb_000318_490 Hb_004333_030--Hb_000318_490 Hb_000896_120 Hb_000896_120 Hb_004333_030--Hb_000896_120 Hb_187083_010 Hb_187083_010 Hb_004333_030--Hb_187083_010 Hb_000106_100 Hb_000106_100 Hb_004333_030--Hb_000106_100 Hb_007520_060 Hb_007520_060 Hb_030565_040--Hb_007520_060 Hb_002320_060 Hb_002320_060 Hb_030565_040--Hb_002320_060 Hb_030565_040--Hb_000318_490 Hb_030565_040--Hb_187083_010 Hb_000236_460 Hb_000236_460 Hb_030565_040--Hb_000236_460 Hb_003349_070 Hb_003349_070 Hb_001623_430--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_183086_040 Hb_183086_040 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_000123_160 Hb_000123_160 Hb_000318_490--Hb_000123_160 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_000976_250 Hb_000976_250 Hb_000318_490--Hb_000976_250 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_000896_120--Hb_183086_040 Hb_000896_120--Hb_000922_100 Hb_000300_390 Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_000215_180 Hb_000215_180 Hb_000896_120--Hb_000215_180 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_000367_210 Hb_000367_210 Hb_187083_010--Hb_000367_210 Hb_003561_030 Hb_003561_030 Hb_187083_010--Hb_003561_030 Hb_187083_010--Hb_000236_460 Hb_000163_130 Hb_000163_130 Hb_187083_010--Hb_000163_130 Hb_021409_090 Hb_021409_090 Hb_187083_010--Hb_021409_090 Hb_011161_050 Hb_011161_050 Hb_187083_010--Hb_011161_050 Hb_000106_100--Hb_000215_180 Hb_000106_100--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_000106_100--Hb_004223_260 Hb_000106_100--Hb_000780_210 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85915 0.863774 0.537989 3.44886 0.731234 6.1114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6083 23.3918 11.2353 4.54392 0.252161

CAGE analysis