Hb_004333_040

Information

Type -
Description -
Location Contig4333: 56305-60718
Sequence    

Annotation

kegg
ID rcu:RCOM_1663450
description nucleic acid binding protein, putative
nr
ID XP_012067044.1
description PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
swissprot
ID Q6JB11
description Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays GN=MEG5 PE=2 SV=1
trembl
ID A0A067L118
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03023 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42395: 56331-63606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004333_040 0.0 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
2 Hb_006189_020 0.0525966209 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
3 Hb_033312_040 0.0546736761 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
4 Hb_000189_600 0.0573092969 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
5 Hb_000699_150 0.0633353165 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
6 Hb_000510_360 0.0644251055 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
7 Hb_183433_010 0.0664124185 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_001241_010 0.0680267024 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_007413_010 0.0686889228 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
10 Hb_008114_040 0.0696551351 - - Fanconi anemia group D2 [Gossypium arboreum]
11 Hb_000139_080 0.0697009369 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
12 Hb_003098_070 0.0701744936 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
13 Hb_001377_190 0.0708927975 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
14 Hb_001699_220 0.0709510563 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
15 Hb_007894_150 0.0712452781 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
16 Hb_001481_060 0.0724752253 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
17 Hb_003883_060 0.0753427467 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
18 Hb_002126_030 0.0760541162 - - ferrochelatase, putative [Ricinus communis]
19 Hb_003430_050 0.0773573384 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
20 Hb_004037_020 0.0777652611 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004333_040 Hb_004333_040 Hb_006189_020 Hb_006189_020 Hb_004333_040--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_004333_040--Hb_033312_040 Hb_000189_600 Hb_000189_600 Hb_004333_040--Hb_000189_600 Hb_000699_150 Hb_000699_150 Hb_004333_040--Hb_000699_150 Hb_000510_360 Hb_000510_360 Hb_004333_040--Hb_000510_360 Hb_183433_010 Hb_183433_010 Hb_004333_040--Hb_183433_010 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_006189_020--Hb_000510_360 Hb_000139_080 Hb_000139_080 Hb_006189_020--Hb_000139_080 Hb_033312_040--Hb_000510_360 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_033312_040--Hb_000139_080 Hb_003098_070 Hb_003098_070 Hb_033312_040--Hb_003098_070 Hb_000189_600--Hb_183433_010 Hb_000617_230 Hb_000617_230 Hb_000189_600--Hb_000617_230 Hb_001377_190 Hb_001377_190 Hb_000189_600--Hb_001377_190 Hb_001430_080 Hb_001430_080 Hb_000189_600--Hb_001430_080 Hb_000521_330 Hb_000521_330 Hb_000189_600--Hb_000521_330 Hb_000699_150--Hb_183433_010 Hb_007472_070 Hb_007472_070 Hb_000699_150--Hb_007472_070 Hb_000699_150--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_000699_150--Hb_000365_230 Hb_000176_020 Hb_000176_020 Hb_000699_150--Hb_000176_020 Hb_000085_170 Hb_000085_170 Hb_000510_360--Hb_000085_170 Hb_003758_010 Hb_003758_010 Hb_000510_360--Hb_003758_010 Hb_000321_140 Hb_000321_140 Hb_000510_360--Hb_000321_140 Hb_000510_360--Hb_001817_170 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_171900_090 Hb_171900_090 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_183433_010--Hb_000365_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.88183 8.36727 10.1271 7.91437 4.11134 5.50454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.69997 5.09186 4.38865 8.80586 8.22185

CAGE analysis