Hb_004336_040

Information

Type -
Description -
Location Contig4336: 30805-34656
Sequence    

Annotation

kegg
ID rcu:RCOM_0127740
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.12.2 1.3.1.74)
nr
ID XP_012065964.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9SVV1
description Leucine-rich repeat receptor protein kinase EXS, putative OS=Ricinus communis GN=RCOM_0127740 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42398: 32359-32534 , PASA_asmbl_42399: 32551-33815 , PASA_asmbl_42400: 34143-34364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004336_040 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
2 Hb_000094_320 0.1153385717 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
3 Hb_001019_180 0.124503481 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
4 Hb_000915_060 0.1287639841 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
5 Hb_000345_140 0.1311197231 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
6 Hb_012114_050 0.1317682854 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
7 Hb_007193_110 0.1365372023 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
8 Hb_000820_120 0.1425182275 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
9 Hb_000373_230 0.1436187283 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_000330_040 0.1438835049 - - PREDICTED: protein RER1B-like [Jatropha curcas]
11 Hb_004032_040 0.1443858775 - - unknown [Medicago truncatula]
12 Hb_178051_070 0.1451901136 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
13 Hb_023226_080 0.1457281685 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
14 Hb_000544_060 0.1466705118 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_128743_010 0.1483939463 - - RNA-binding protein, putative [Ricinus communis]
16 Hb_013749_020 0.1488906321 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
17 Hb_001301_170 0.1498447957 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
18 Hb_000661_200 0.1513348542 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
19 Hb_052764_060 0.1524244879 - - XPA-binding protein, putative [Ricinus communis]
20 Hb_000483_380 0.1536971063 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004336_040 Hb_004336_040 Hb_000094_320 Hb_000094_320 Hb_004336_040--Hb_000094_320 Hb_001019_180 Hb_001019_180 Hb_004336_040--Hb_001019_180 Hb_000915_060 Hb_000915_060 Hb_004336_040--Hb_000915_060 Hb_000345_140 Hb_000345_140 Hb_004336_040--Hb_000345_140 Hb_012114_050 Hb_012114_050 Hb_004336_040--Hb_012114_050 Hb_007193_110 Hb_007193_110 Hb_004336_040--Hb_007193_110 Hb_000347_120 Hb_000347_120 Hb_000094_320--Hb_000347_120 Hb_004371_010 Hb_004371_010 Hb_000094_320--Hb_004371_010 Hb_000094_320--Hb_007193_110 Hb_000094_320--Hb_012114_050 Hb_000526_060 Hb_000526_060 Hb_000094_320--Hb_000526_060 Hb_004410_070 Hb_004410_070 Hb_000094_320--Hb_004410_070 Hb_000330_040 Hb_000330_040 Hb_001019_180--Hb_000330_040 Hb_012799_120 Hb_012799_120 Hb_001019_180--Hb_012799_120 Hb_002110_030 Hb_002110_030 Hb_001019_180--Hb_002110_030 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_000373_230 Hb_000373_230 Hb_000915_060--Hb_000373_230 Hb_003849_140 Hb_003849_140 Hb_000915_060--Hb_003849_140 Hb_001277_020 Hb_001277_020 Hb_000915_060--Hb_001277_020 Hb_000723_110 Hb_000723_110 Hb_000915_060--Hb_000723_110 Hb_001410_020 Hb_001410_020 Hb_000915_060--Hb_001410_020 Hb_000236_470 Hb_000236_470 Hb_000915_060--Hb_000236_470 Hb_003785_040 Hb_003785_040 Hb_000345_140--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000345_140--Hb_000441_070 Hb_002043_140 Hb_002043_140 Hb_000345_140--Hb_002043_140 Hb_128743_010 Hb_128743_010 Hb_000345_140--Hb_128743_010 Hb_006420_040 Hb_006420_040 Hb_000345_140--Hb_006420_040 Hb_000395_130 Hb_000395_130 Hb_000345_140--Hb_000395_130 Hb_012114_050--Hb_007193_110 Hb_012114_050--Hb_004410_070 Hb_000556_170 Hb_000556_170 Hb_012114_050--Hb_000556_170 Hb_000625_120 Hb_000625_120 Hb_012114_050--Hb_000625_120 Hb_007576_220 Hb_007576_220 Hb_012114_050--Hb_007576_220 Hb_007193_110--Hb_004410_070 Hb_007193_110--Hb_007576_220 Hb_007193_110--Hb_000556_170 Hb_001021_200 Hb_001021_200 Hb_007193_110--Hb_001021_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104993 0.40515 0.167615 0.0714938 0.34046 0.107166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0569407 0.125469 0.172019 0.195271 0.0959624

CAGE analysis