Hb_004336_050

Information

Type -
Description -
Location Contig4336: 38895-39233
Sequence    

Annotation

kegg
ID tcc:TCM_005972
description hypothetical protein
nr
ID KDP43118.1
description hypothetical protein JCGZ_26651 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26651 PE=4 SV=1
Gene Ontology
ID GO:0005747
description excitatory amino acid transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42401: 34966-39300
cDNA
(Sanger)
(ID:Location)		 001_C10.ab1: 35015-39300 , 010_A10.ab1: 35091-39301 , 020_E17.ab1: 35009-39300 , 049_K06.ab1: 35028-39300

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004336_050 0.0 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
2 Hb_000672_120 0.0621235777 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
3 Hb_004374_140 0.0634388748 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
4 Hb_180301_010 0.0678197283 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
5 Hb_172706_030 0.0706406341 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
6 Hb_008544_010 0.0744763445 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
7 Hb_001307_090 0.0763235271 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
8 Hb_000172_030 0.0797311947 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_000364_020 0.0805741608 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
10 Hb_005588_070 0.0818146691 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
11 Hb_001504_080 0.0827119904 - - golgi snare 11 protein, putative [Ricinus communis]
12 Hb_000024_030 0.0844997032 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
13 Hb_000975_110 0.0862511414 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
14 Hb_124755_010 0.088621864 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
15 Hb_001461_010 0.091298672 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
16 Hb_000224_120 0.0914183517 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
17 Hb_002878_010 0.0918193639 - - -
18 Hb_010812_010 0.0928300985 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
19 Hb_007594_090 0.0939673187 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
20 Hb_004032_100 0.0977287489 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]

Gene co-expression network

sample Hb_004336_050 Hb_004336_050 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004374_140 Hb_004374_140 Hb_004336_050--Hb_004374_140 Hb_180301_010 Hb_180301_010 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_007594_090 Hb_007594_090 Hb_000672_120--Hb_007594_090 Hb_000672_120--Hb_172706_030 Hb_005588_070 Hb_005588_070 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_000672_120--Hb_001307_090 Hb_004374_140--Hb_008544_010 Hb_001461_010 Hb_001461_010 Hb_004374_140--Hb_001461_010 Hb_004374_140--Hb_180301_010 Hb_002631_020 Hb_002631_020 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_140543_010 Hb_140543_010 Hb_172706_030--Hb_140543_010 Hb_002878_010 Hb_002878_010 Hb_172706_030--Hb_002878_010 Hb_001504_080 Hb_001504_080 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020 Hb_008544_010--Hb_001461_010 Hb_008544_010--Hb_000172_030 Hb_001191_090 Hb_001191_090 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290 Hb_000122_020 Hb_000122_020 Hb_001307_090--Hb_000122_020 Hb_000975_110 Hb_000975_110 Hb_001307_090--Hb_000975_110 Hb_001307_090--Hb_124755_010 Hb_000024_030 Hb_000024_030 Hb_001307_090--Hb_000024_030 Hb_004449_200 Hb_004449_200 Hb_001307_090--Hb_004449_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
205.07 54.6256 90.1391 418.034 198.799 600.287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
776.843 791.921 596.935 210.836 182.38

CAGE analysis