Hb_004342_030

Information

Type -
Description -
Location Contig4342: 16357-21136
Sequence    

Annotation

kegg
ID rcu:RCOM_0799050
description phosphofructokinase, putative (EC:2.7.1.11)
nr
ID AIE47270.1
description phosphofructokinase [Hevea brasiliensis]
swissprot
ID Q94AA4
description ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1
trembl
ID A0A068LQG1
description ATP-dependent 6-phosphofructokinase OS=Hevea brasiliensis GN=PFK1 PE=2 SV=1
Gene Ontology
ID GO:0003872
description atp-dependent 6-phosphofructokinase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42420: 16533-20888 , PASA_asmbl_42421: 16533-21181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004342_030 0.0 - - phosphofructokinase [Hevea brasiliensis]
2 Hb_000009_620 0.1889101239 - - zinc finger protein, putative [Ricinus communis]
3 Hb_034299_040 0.1903395768 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_001902_070 0.1917854838 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000041_220 0.1977059914 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
6 Hb_000398_190 0.2000026813 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
7 Hb_000270_220 0.2116335008 - - hypothetical protein EUTSA_v100213350mg, partial [Eutrema salsugineum]
8 Hb_005410_040 0.2133194378 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
9 Hb_051407_010 0.2143333347 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
10 Hb_000025_310 0.214678597 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000920_270 0.2168722739 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
12 Hb_024505_050 0.2202492551 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
13 Hb_000261_260 0.2203055891 - - PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
14 Hb_002759_280 0.2210357309 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
15 Hb_000861_030 0.2223309335 - - -
16 Hb_002805_070 0.2225368136 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
17 Hb_001278_070 0.2240519789 - - hypothetical protein glysoja_020139 [Glycine soja]
18 Hb_002046_040 0.2242733395 - - PREDICTED: topless-related protein 4 [Malus domestica]
19 Hb_002400_100 0.2249164599 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
20 Hb_000009_590 0.2249319636 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004342_030 Hb_004342_030 Hb_000009_620 Hb_000009_620 Hb_004342_030--Hb_000009_620 Hb_034299_040 Hb_034299_040 Hb_004342_030--Hb_034299_040 Hb_001902_070 Hb_001902_070 Hb_004342_030--Hb_001902_070 Hb_000041_220 Hb_000041_220 Hb_004342_030--Hb_000041_220 Hb_000398_190 Hb_000398_190 Hb_004342_030--Hb_000398_190 Hb_000270_220 Hb_000270_220 Hb_004342_030--Hb_000270_220 Hb_001856_010 Hb_001856_010 Hb_000009_620--Hb_001856_010 Hb_028872_060 Hb_028872_060 Hb_000009_620--Hb_028872_060 Hb_000828_040 Hb_000828_040 Hb_000009_620--Hb_000828_040 Hb_002407_080 Hb_002407_080 Hb_000009_620--Hb_002407_080 Hb_114310_040 Hb_114310_040 Hb_000009_620--Hb_114310_040 Hb_002759_280 Hb_002759_280 Hb_034299_040--Hb_002759_280 Hb_004440_100 Hb_004440_100 Hb_034299_040--Hb_004440_100 Hb_051407_010 Hb_051407_010 Hb_034299_040--Hb_051407_010 Hb_034299_040--Hb_000398_190 Hb_001252_080 Hb_001252_080 Hb_034299_040--Hb_001252_080 Hb_109168_010 Hb_109168_010 Hb_034299_040--Hb_109168_010 Hb_002890_210 Hb_002890_210 Hb_001902_070--Hb_002890_210 Hb_186982_030 Hb_186982_030 Hb_001902_070--Hb_186982_030 Hb_000395_140 Hb_000395_140 Hb_001902_070--Hb_000395_140 Hb_054380_010 Hb_054380_010 Hb_001902_070--Hb_054380_010 Hb_001278_070 Hb_001278_070 Hb_001902_070--Hb_001278_070 Hb_002284_300 Hb_002284_300 Hb_001902_070--Hb_002284_300 Hb_006816_320 Hb_006816_320 Hb_000041_220--Hb_006816_320 Hb_002046_040 Hb_002046_040 Hb_000041_220--Hb_002046_040 Hb_000041_220--Hb_000398_190 Hb_000284_210 Hb_000284_210 Hb_000041_220--Hb_000284_210 Hb_000236_370 Hb_000236_370 Hb_000041_220--Hb_000236_370 Hb_009620_040 Hb_009620_040 Hb_000041_220--Hb_009620_040 Hb_002701_080 Hb_002701_080 Hb_000398_190--Hb_002701_080 Hb_001504_160 Hb_001504_160 Hb_000398_190--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_000398_190--Hb_012654_010 Hb_011612_010 Hb_011612_010 Hb_000398_190--Hb_011612_010 Hb_000230_330 Hb_000230_330 Hb_000398_190--Hb_000230_330 Hb_148079_010 Hb_148079_010 Hb_000270_220--Hb_148079_010 Hb_019053_020 Hb_019053_020 Hb_000270_220--Hb_019053_020 Hb_005147_060 Hb_005147_060 Hb_000270_220--Hb_005147_060 Hb_058643_010 Hb_058643_010 Hb_000270_220--Hb_058643_010 Hb_000021_030 Hb_000021_030 Hb_000270_220--Hb_000021_030 Hb_004732_020 Hb_004732_020 Hb_000270_220--Hb_004732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5781 8.76223 2.63066 6.78539 44.5771 60.8551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.47217 24.286 17.3932 56.0381 1.43337

CAGE analysis