Hb_004346_030

Information

Type -
Description -
Location Contig4346: 41791-47693
Sequence    

Annotation

kegg
ID rcu:RCOM_0422550
description sucrose phosphate phosphatase, putative
nr
ID XP_002524098.1
description sucrose phosphate phosphatase, putative [Ricinus communis]
swissprot
ID Q5IH14
description Sucrose-phosphatase 1 OS=Nicotiana tabacum GN=SPP1 PE=2 SV=1
trembl
ID B9SDM9
description Sucrose phosphate phosphatase, putative OS=Ricinus communis GN=RCOM_0422550 PE=4 SV=1
Gene Ontology
ID GO:0000287
description sucrose-phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42425: 41799-47041 , PASA_asmbl_42426: 42019-44982 , PASA_asmbl_42427: 43281-43595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004346_030 0.0 - - sucrose phosphate phosphatase, putative [Ricinus communis]
2 Hb_007831_020 0.1207603505 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002503_020 0.1311163518 - - Phosphatase 2C family protein, putative [Theobroma cacao]
4 Hb_002284_310 0.1337441467 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
5 Hb_000174_030 0.1383283549 - - hypothetical protein RCOM_1077370 [Ricinus communis]
6 Hb_000617_200 0.1405390211 - - f-actin capping protein alpha, putative [Ricinus communis]
7 Hb_004225_080 0.143549559 - - -
8 Hb_000603_230 0.1524290649 - - copper-transporting atpase paa1, putative [Ricinus communis]
9 Hb_161175_010 0.1528010856 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
10 Hb_000337_050 0.1537685522 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
11 Hb_003734_110 0.1552592754 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
12 Hb_034013_020 0.1555127969 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
13 Hb_003849_150 0.1565441829 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
14 Hb_003082_030 0.1576781527 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
15 Hb_006442_020 0.1602254065 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
16 Hb_012244_010 0.1604289328 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
17 Hb_000525_050 0.1615663114 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011689_120 0.1639045281 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
19 Hb_002871_190 0.1649754474 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
20 Hb_000331_460 0.1659873248 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004346_030 Hb_004346_030 Hb_007831_020 Hb_007831_020 Hb_004346_030--Hb_007831_020 Hb_002503_020 Hb_002503_020 Hb_004346_030--Hb_002503_020 Hb_002284_310 Hb_002284_310 Hb_004346_030--Hb_002284_310 Hb_000174_030 Hb_000174_030 Hb_004346_030--Hb_000174_030 Hb_000617_200 Hb_000617_200 Hb_004346_030--Hb_000617_200 Hb_004225_080 Hb_004225_080 Hb_004346_030--Hb_004225_080 Hb_007831_020--Hb_002284_310 Hb_001014_170 Hb_001014_170 Hb_007831_020--Hb_001014_170 Hb_003687_150 Hb_003687_150 Hb_007831_020--Hb_003687_150 Hb_000335_030 Hb_000335_030 Hb_007831_020--Hb_000335_030 Hb_034013_020 Hb_034013_020 Hb_007831_020--Hb_034013_020 Hb_019113_020 Hb_019113_020 Hb_002503_020--Hb_019113_020 Hb_000125_210 Hb_000125_210 Hb_002503_020--Hb_000125_210 Hb_161175_010 Hb_161175_010 Hb_002503_020--Hb_161175_010 Hb_000733_180 Hb_000733_180 Hb_002503_020--Hb_000733_180 Hb_000853_190 Hb_000853_190 Hb_002503_020--Hb_000853_190 Hb_002503_020--Hb_000617_200 Hb_000603_230 Hb_000603_230 Hb_002284_310--Hb_000603_230 Hb_003992_170 Hb_003992_170 Hb_002284_310--Hb_003992_170 Hb_000331_460 Hb_000331_460 Hb_002284_310--Hb_000331_460 Hb_002871_190 Hb_002871_190 Hb_002284_310--Hb_002871_190 Hb_002284_310--Hb_004225_080 Hb_000174_030--Hb_002871_190 Hb_002540_080 Hb_002540_080 Hb_000174_030--Hb_002540_080 Hb_001604_060 Hb_001604_060 Hb_000174_030--Hb_001604_060 Hb_001268_420 Hb_001268_420 Hb_000174_030--Hb_001268_420 Hb_001318_260 Hb_001318_260 Hb_000174_030--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_000174_030--Hb_011689_120 Hb_000329_210 Hb_000329_210 Hb_000617_200--Hb_000329_210 Hb_003050_250 Hb_003050_250 Hb_000617_200--Hb_003050_250 Hb_000617_200--Hb_019113_020 Hb_000617_200--Hb_161175_010 Hb_006442_020 Hb_006442_020 Hb_000617_200--Hb_006442_020 Hb_001545_100 Hb_001545_100 Hb_004225_080--Hb_001545_100 Hb_000140_050 Hb_000140_050 Hb_004225_080--Hb_000140_050 Hb_000258_330 Hb_000258_330 Hb_004225_080--Hb_000258_330 Hb_003540_030 Hb_003540_030 Hb_004225_080--Hb_003540_030 Hb_004225_080--Hb_002871_190 Hb_010883_050 Hb_010883_050 Hb_004225_080--Hb_010883_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1914 5.64769 25.154 20.9766 4.0698 16.9168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.3127 25.2732 44.9438 12.8808 50.3702

CAGE analysis