Hb_004355_020

Information

Type -
Description -
Location Contig4355: 58833-63213
Sequence    

Annotation

kegg
ID rcu:RCOM_0681970
description lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative (EC:2.3.1.168)
nr
ID XP_012083971.1
description PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
swissprot
ID Q9M7Z1
description Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=BCE2 PE=1 SV=1
trembl
ID A0A067JVB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18902 PE=3 SV=1
Gene Ontology
ID GO:0016747
description lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42436: 58874-63183 , PASA_asmbl_42437: 61644-61976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004355_020 0.0 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
2 Hb_007254_070 0.0629944792 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
3 Hb_011671_430 0.0633180743 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
4 Hb_001021_170 0.064457861 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
5 Hb_000629_010 0.0646473408 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
6 Hb_011218_040 0.0657505145 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
7 Hb_006788_020 0.0671767685 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
8 Hb_002603_120 0.0682625996 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
9 Hb_000768_040 0.071644952 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
10 Hb_167498_010 0.0732290119 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_000173_490 0.0744386425 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
12 Hb_000189_560 0.0749461914 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
13 Hb_000574_540 0.0755170461 - - ATP binding protein, putative [Ricinus communis]
14 Hb_007416_180 0.0756649555 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
15 Hb_004577_020 0.078189194 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
16 Hb_123352_020 0.0788202078 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
17 Hb_011491_010 0.0789627432 - - Protein YME1, putative [Ricinus communis]
18 Hb_000859_060 0.0791507545 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
19 Hb_000487_290 0.079236261 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
20 Hb_000538_270 0.0799612428 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]

Gene co-expression network

sample Hb_004355_020 Hb_004355_020 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_001021_170 Hb_001021_170 Hb_004355_020--Hb_001021_170 Hb_000629_010 Hb_000629_010 Hb_004355_020--Hb_000629_010 Hb_011218_040 Hb_011218_040 Hb_004355_020--Hb_011218_040 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020 Hb_167498_010 Hb_167498_010 Hb_007254_070--Hb_167498_010 Hb_120327_010 Hb_120327_010 Hb_007254_070--Hb_120327_010 Hb_002903_060 Hb_002903_060 Hb_007254_070--Hb_002903_060 Hb_000395_130 Hb_000395_130 Hb_007254_070--Hb_000395_130 Hb_003158_010 Hb_003158_010 Hb_007254_070--Hb_003158_010 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_011671_430--Hb_003158_010 Hb_015807_070 Hb_015807_070 Hb_001021_170--Hb_015807_070 Hb_000768_040 Hb_000768_040 Hb_001021_170--Hb_000768_040 Hb_045793_010 Hb_045793_010 Hb_001021_170--Hb_045793_010 Hb_006847_040 Hb_006847_040 Hb_001021_170--Hb_006847_040 Hb_007416_180 Hb_007416_180 Hb_001021_170--Hb_007416_180 Hb_000808_270 Hb_000808_270 Hb_000629_010--Hb_000808_270 Hb_000030_300 Hb_000030_300 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020 Hb_000260_270 Hb_000260_270 Hb_011218_040--Hb_000260_270 Hb_005064_060 Hb_005064_060 Hb_011218_040--Hb_005064_060 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_000556_160 Hb_000556_160 Hb_006788_020--Hb_000556_160 Hb_006788_020--Hb_000629_010 Hb_006788_020--Hb_011218_040 Hb_000739_100 Hb_000739_100 Hb_006788_020--Hb_000739_100 Hb_000571_120 Hb_000571_120 Hb_006788_020--Hb_000571_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0101 33.2315 13.5976 14.6432 23.6835 31.3334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.7178 25.1157 27.4519 25.6227 13.394

CAGE analysis