Hb_004357_050

Information

Type -
Description -
Location Contig4357: 45449-51216
Sequence    

Annotation

kegg
ID rcu:RCOM_1186440
description Histone deacetylase 2a, putative
nr
ID XP_012076192.1
description PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
swissprot
ID Q8LJS2
description Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1
trembl
ID A0A067KRB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11252 PE=4 SV=1
Gene Ontology
ID GO:0046872
description histone deacetylase hdt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42445: 45356-51148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004357_050 0.0 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
2 Hb_000215_090 0.0843857819 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
3 Hb_005288_130 0.0896616735 - - protein with unknown function [Ricinus communis]
4 Hb_000116_490 0.0991519149 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
5 Hb_004109_340 0.1009913535 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
6 Hb_032202_100 0.1038979597 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_000130_270 0.1049741851 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
8 Hb_000946_090 0.1102622281 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
9 Hb_000120_540 0.1118474498 - - translation initiation factor, putative [Ricinus communis]
10 Hb_002272_270 0.1127541276 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
11 Hb_000398_060 0.1156495573 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
12 Hb_163175_010 0.117624087 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
13 Hb_001804_080 0.1184011544 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
14 Hb_000333_110 0.1214536068 - - conserved hypothetical protein [Ricinus communis]
15 Hb_161574_020 0.1233100881 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
16 Hb_002042_150 0.1234843488 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
17 Hb_000840_200 0.125517249 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
18 Hb_000152_600 0.1258477602 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
19 Hb_000035_160 0.1267865161 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
20 Hb_111036_010 0.1268162757 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]

Gene co-expression network

sample Hb_004357_050 Hb_004357_050 Hb_000215_090 Hb_000215_090 Hb_004357_050--Hb_000215_090 Hb_005288_130 Hb_005288_130 Hb_004357_050--Hb_005288_130 Hb_000116_490 Hb_000116_490 Hb_004357_050--Hb_000116_490 Hb_004109_340 Hb_004109_340 Hb_004357_050--Hb_004109_340 Hb_032202_100 Hb_032202_100 Hb_004357_050--Hb_032202_100 Hb_000130_270 Hb_000130_270 Hb_004357_050--Hb_000130_270 Hb_000215_090--Hb_032202_100 Hb_000215_090--Hb_000130_270 Hb_002471_250 Hb_002471_250 Hb_000215_090--Hb_002471_250 Hb_000215_090--Hb_005288_130 Hb_003207_180 Hb_003207_180 Hb_000215_090--Hb_003207_180 Hb_000398_060 Hb_000398_060 Hb_005288_130--Hb_000398_060 Hb_005288_130--Hb_000116_490 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_000840_200 Hb_000840_200 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060 Hb_001804_080 Hb_001804_080 Hb_000116_490--Hb_001804_080 Hb_000116_490--Hb_032202_100 Hb_000946_090 Hb_000946_090 Hb_000116_490--Hb_000946_090 Hb_002303_020 Hb_002303_020 Hb_000116_490--Hb_002303_020 Hb_000270_310 Hb_000270_310 Hb_000116_490--Hb_000270_310 Hb_002042_150 Hb_002042_150 Hb_004109_340--Hb_002042_150 Hb_000136_260 Hb_000136_260 Hb_004109_340--Hb_000136_260 Hb_011628_060 Hb_011628_060 Hb_004109_340--Hb_011628_060 Hb_023001_040 Hb_023001_040 Hb_004109_340--Hb_023001_040 Hb_161574_020 Hb_161574_020 Hb_004109_340--Hb_161574_020 Hb_001189_070 Hb_001189_070 Hb_004109_340--Hb_001189_070 Hb_032202_100--Hb_000130_270 Hb_000926_200 Hb_000926_200 Hb_032202_100--Hb_000926_200 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_032202_100--Hb_000946_090 Hb_032202_100--Hb_161574_020 Hb_000130_270--Hb_161574_020 Hb_000130_270--Hb_163175_010 Hb_006846_130 Hb_006846_130 Hb_000130_270--Hb_006846_130 Hb_000076_220 Hb_000076_220 Hb_000130_270--Hb_000076_220 Hb_000086_170 Hb_000086_170 Hb_000130_270--Hb_000086_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1814 16.0236 52.7368 57.3426 16.8084 29.967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6666 57.0074 12.0234 46.8291 27.5421

CAGE analysis