Hb_004357_060

Information

Type -
Description -
Location Contig4357: 54993-56265
Sequence    

Annotation

kegg
ID rcu:RCOM_1186550
description hypothetical protein
nr
ID XP_012076193.1
description PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
swissprot
ID Q56XJ7
description Uncharacterized protein At4g22758 OS=Arabidopsis thaliana GN=At4g22758 PE=2 SV=1
trembl
ID A0A067KPZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11253 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42447: 54918-56262 , PASA_asmbl_42448: 54918-56262 , PASA_asmbl_42449: 55224-55409
cDNA
(Sanger)
(ID:Location)		 015_O05.ab1: 55736-56262

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004357_060 0.0 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
2 Hb_004162_270 0.1254395815 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
3 Hb_005784_030 0.1452218902 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
4 Hb_006420_010 0.1485308877 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
5 Hb_000054_030 0.1497476625 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
6 Hb_005917_020 0.1532224257 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
7 Hb_007904_060 0.155283285 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
8 Hb_000684_200 0.159518248 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_000395_010 0.1599920919 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
10 Hb_012851_020 0.1603697428 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_142663_020 0.163201617 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_003688_140 0.16329562 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
13 Hb_004837_100 0.1652624262 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
14 Hb_000139_270 0.1658301506 - - hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
15 Hb_000264_280 0.1661842639 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
16 Hb_033363_050 0.1690864611 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 isoform X2 [Jatropha curcas]
17 Hb_005305_010 0.1701245807 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
18 Hb_005493_010 0.1724081681 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
19 Hb_000005_100 0.1740848468 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
20 Hb_003680_090 0.1741064122 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004357_060 Hb_004357_060 Hb_004162_270 Hb_004162_270 Hb_004357_060--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_004357_060--Hb_005784_030 Hb_006420_010 Hb_006420_010 Hb_004357_060--Hb_006420_010 Hb_000054_030 Hb_000054_030 Hb_004357_060--Hb_000054_030 Hb_005917_020 Hb_005917_020 Hb_004357_060--Hb_005917_020 Hb_007904_060 Hb_007904_060 Hb_004357_060--Hb_007904_060 Hb_000684_200 Hb_000684_200 Hb_004162_270--Hb_000684_200 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_003680_090 Hb_003680_090 Hb_004162_270--Hb_003680_090 Hb_003053_070 Hb_003053_070 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_004162_270--Hb_005784_030 Hb_005784_030--Hb_007904_060 Hb_003664_030 Hb_003664_030 Hb_005784_030--Hb_003664_030 Hb_000264_280 Hb_000264_280 Hb_005784_030--Hb_000264_280 Hb_005784_030--Hb_000684_200 Hb_005784_030--Hb_000270_280 Hb_003948_020 Hb_003948_020 Hb_005784_030--Hb_003948_020 Hb_158092_100 Hb_158092_100 Hb_006420_010--Hb_158092_100 Hb_006420_010--Hb_007904_060 Hb_006420_010--Hb_000264_280 Hb_000108_150 Hb_000108_150 Hb_006420_010--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_006420_010--Hb_000061_250 Hb_006420_010--Hb_004162_270 Hb_002235_110 Hb_002235_110 Hb_000054_030--Hb_002235_110 Hb_002949_020 Hb_002949_020 Hb_000054_030--Hb_002949_020 Hb_002397_050 Hb_002397_050 Hb_000054_030--Hb_002397_050 Hb_003226_200 Hb_003226_200 Hb_000054_030--Hb_003226_200 Hb_033152_110 Hb_033152_110 Hb_000054_030--Hb_033152_110 Hb_074197_030 Hb_074197_030 Hb_000054_030--Hb_074197_030 Hb_005917_020--Hb_003680_090 Hb_004502_010 Hb_004502_010 Hb_005917_020--Hb_004502_010 Hb_011114_020 Hb_011114_020 Hb_005917_020--Hb_011114_020 Hb_000307_070 Hb_000307_070 Hb_005917_020--Hb_000307_070 Hb_001959_060 Hb_001959_060 Hb_005917_020--Hb_001959_060 Hb_002811_310 Hb_002811_310 Hb_005917_020--Hb_002811_310 Hb_007904_060--Hb_158092_100 Hb_007904_060--Hb_000108_150 Hb_003020_250 Hb_003020_250 Hb_007904_060--Hb_003020_250 Hb_003752_090 Hb_003752_090 Hb_007904_060--Hb_003752_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22338 20.1262 92.4097 48.9492 5.25189 1.43529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.97923 41.5633 5.88949 34.4803 140.28

CAGE analysis