Hb_004361_050

Information

Type -
Description -
Location Contig4361: 66485-70276
Sequence    

Annotation

kegg
ID rcu:RCOM_0724590
description ring finger containing protein, putative
nr
ID XP_002524891.1
description ring finger containing protein, putative [Ricinus communis]
swissprot
ID Q7XTV7
description Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2
trembl
ID B9SFX2
description Ring finger containing protein, putative OS=Ricinus communis GN=RCOM_0724590 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42462: 67354-67979 , PASA_asmbl_42463: 66365-70279 , PASA_asmbl_42464: 68800-69332
cDNA
(Sanger)
(ID:Location)		 007_J07.ab1: 66476-67265

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004361_050 0.0 - - ring finger containing protein, putative [Ricinus communis]
2 Hb_005214_060 0.1089657028 - - catalytic, putative [Ricinus communis]
3 Hb_001196_070 0.1110530806 - - nucleolar protein nop56, putative [Ricinus communis]
4 Hb_002675_060 0.117635661 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
5 Hb_152079_010 0.1206348721 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
6 Hb_024990_010 0.1208376506 - - PREDICTED: la protein 1 [Jatropha curcas]
7 Hb_001575_040 0.1209395628 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
8 Hb_007668_040 0.1211612133 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
9 Hb_002893_150 0.1223017637 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
10 Hb_000531_090 0.1238052725 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
11 Hb_001221_040 0.1240282981 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
12 Hb_135377_010 0.1253493928 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
13 Hb_125092_020 0.126053559 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
14 Hb_002942_080 0.1263828508 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
15 Hb_008406_140 0.1264418669 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_000457_060 0.1284885835 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_000347_280 0.1289878631 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
18 Hb_005129_050 0.1293589914 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
19 Hb_000213_070 0.1303273693 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
20 Hb_021409_170 0.1304594602 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_004361_050 Hb_004361_050 Hb_005214_060 Hb_005214_060 Hb_004361_050--Hb_005214_060 Hb_001196_070 Hb_001196_070 Hb_004361_050--Hb_001196_070 Hb_002675_060 Hb_002675_060 Hb_004361_050--Hb_002675_060 Hb_152079_010 Hb_152079_010 Hb_004361_050--Hb_152079_010 Hb_024990_010 Hb_024990_010 Hb_004361_050--Hb_024990_010 Hb_001575_040 Hb_001575_040 Hb_004361_050--Hb_001575_040 Hb_009913_050 Hb_009913_050 Hb_005214_060--Hb_009913_050 Hb_002942_080 Hb_002942_080 Hb_005214_060--Hb_002942_080 Hb_005214_060--Hb_002675_060 Hb_000213_070 Hb_000213_070 Hb_005214_060--Hb_000213_070 Hb_000331_190 Hb_000331_190 Hb_005214_060--Hb_000331_190 Hb_005214_060--Hb_024990_010 Hb_005129_050 Hb_005129_050 Hb_001196_070--Hb_005129_050 Hb_001278_060 Hb_001278_060 Hb_001196_070--Hb_001278_060 Hb_001433_190 Hb_001433_190 Hb_001196_070--Hb_001433_190 Hb_125092_020 Hb_125092_020 Hb_001196_070--Hb_125092_020 Hb_000120_510 Hb_000120_510 Hb_001196_070--Hb_000120_510 Hb_001301_210 Hb_001301_210 Hb_001196_070--Hb_001301_210 Hb_001221_040 Hb_001221_040 Hb_002675_060--Hb_001221_040 Hb_002675_060--Hb_000213_070 Hb_000035_040 Hb_000035_040 Hb_002675_060--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_002675_060--Hb_002652_040 Hb_002675_060--Hb_002942_080 Hb_002675_060--Hb_000331_190 Hb_002893_150 Hb_002893_150 Hb_152079_010--Hb_002893_150 Hb_000531_090 Hb_000531_090 Hb_152079_010--Hb_000531_090 Hb_010423_020 Hb_010423_020 Hb_152079_010--Hb_010423_020 Hb_152079_010--Hb_001575_040 Hb_000789_080 Hb_000789_080 Hb_152079_010--Hb_000789_080 Hb_000915_050 Hb_000915_050 Hb_152079_010--Hb_000915_050 Hb_024990_010--Hb_000331_190 Hb_024990_010--Hb_000531_090 Hb_024990_010--Hb_125092_020 Hb_000340_160 Hb_000340_160 Hb_024990_010--Hb_000340_160 Hb_024990_010--Hb_001221_040 Hb_007668_040 Hb_007668_040 Hb_024990_010--Hb_007668_040 Hb_001575_040--Hb_010423_020 Hb_000436_040 Hb_000436_040 Hb_001575_040--Hb_000436_040 Hb_001575_040--Hb_024990_010 Hb_004881_050 Hb_004881_050 Hb_001575_040--Hb_004881_050 Hb_005000_100 Hb_005000_100 Hb_001575_040--Hb_005000_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.163 22.5131 31.7382 33.7033 81.2887 132.154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.3713 30.02 20.0866 67.0196 20.8777

CAGE analysis