Hb_004363_010

Information

Type -
Description -
Location Contig4363: 5883-6688
Sequence    

Annotation

kegg
ID cit:102631144
description mitotic-spindle organizing protein 1B-like
nr
ID KDO61916.1
description hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
swissprot
ID Q9M0N8
description Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1
trembl
ID A0A067FFD1
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0405721mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42469: 5914-6599
cDNA
(Sanger)
(ID:Location)		 032_P08.ab1: 5914-6562

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004363_010 0.0 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
2 Hb_002292_010 0.0757325457 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
3 Hb_000976_260 0.0860752842 - - -
4 Hb_003050_200 0.0891647227 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
5 Hb_008112_040 0.0903091913 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
6 Hb_007441_210 0.0954918755 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
7 Hb_007007_050 0.0958549347 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
8 Hb_002918_210 0.0974011111 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
9 Hb_002639_150 0.101115452 - - -
10 Hb_141532_010 0.1012312157 - - PREDICTED: protein SMG9-like [Jatropha curcas]
11 Hb_000009_530 0.1012692879 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
12 Hb_000661_140 0.10203442 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
13 Hb_000175_090 0.1027930331 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002192_080 0.1037781797 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
15 Hb_022132_010 0.1042758669 - - unknown [Medicago truncatula]
16 Hb_013405_060 0.1045968956 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
17 Hb_000261_250 0.1061829233 - - elongation factor 1-alpha [Lepidium sativum]
18 Hb_000610_010 0.1074408534 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
19 Hb_003687_230 0.1087819902 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
20 Hb_001142_050 0.1101825154 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_004363_010 Hb_004363_010 Hb_002292_010 Hb_002292_010 Hb_004363_010--Hb_002292_010 Hb_000976_260 Hb_000976_260 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_008112_040 Hb_008112_040 Hb_004363_010--Hb_008112_040 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_007007_050 Hb_007007_050 Hb_004363_010--Hb_007007_050 Hb_002292_010--Hb_007007_050 Hb_141532_010 Hb_141532_010 Hb_002292_010--Hb_141532_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002639_150 Hb_002639_150 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_001142_050 Hb_001142_050 Hb_000976_260--Hb_001142_050 Hb_000012_020 Hb_000012_020 Hb_000976_260--Hb_000012_020 Hb_000261_250 Hb_000261_250 Hb_000976_260--Hb_000261_250 Hb_000661_140 Hb_000661_140 Hb_000976_260--Hb_000661_140 Hb_000976_260--Hb_002639_150 Hb_002918_210 Hb_002918_210 Hb_003050_200--Hb_002918_210 Hb_011224_060 Hb_011224_060 Hb_003050_200--Hb_011224_060 Hb_000808_250 Hb_000808_250 Hb_003050_200--Hb_000808_250 Hb_105386_010 Hb_105386_010 Hb_003050_200--Hb_105386_010 Hb_011970_030 Hb_011970_030 Hb_003050_200--Hb_011970_030 Hb_007154_020 Hb_007154_020 Hb_008112_040--Hb_007154_020 Hb_013405_060 Hb_013405_060 Hb_008112_040--Hb_013405_060 Hb_000025_230 Hb_000025_230 Hb_008112_040--Hb_000025_230 Hb_028841_030 Hb_028841_030 Hb_008112_040--Hb_028841_030 Hb_008112_040--Hb_003687_230 Hb_007441_210--Hb_013405_060 Hb_007441_210--Hb_028841_030 Hb_021419_020 Hb_021419_020 Hb_007441_210--Hb_021419_020 Hb_000742_140 Hb_000742_140 Hb_007441_210--Hb_000742_140 Hb_000084_290 Hb_000084_290 Hb_007441_210--Hb_000084_290 Hb_019962_030 Hb_019962_030 Hb_007007_050--Hb_019962_030 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.671 54.4516 90.7285 41.1538 87.7991 89.033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.5843 120.909 40.2075 15.3012 15.7251

CAGE analysis