Hb_004371_010

Information

Type transcription factor
Description TF Family: bZIP
Location Contig4371: 18005-28381
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03590g
description POPTRDRAFT_825048; DNA-binding protein VBP1
nr
ID XP_012082564.1
description PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
swissprot
ID O24160
description TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1
trembl
ID A0A067K2L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16647 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor hbp-1b -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42482: 17945-28281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004371_010 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
2 Hb_000094_320 0.0799147197 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
3 Hb_000061_490 0.0815285125 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
4 Hb_000768_180 0.0819606399 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
5 Hb_144744_010 0.083323233 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
6 Hb_000347_120 0.0873336415 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
7 Hb_000735_160 0.0881829016 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
8 Hb_001141_370 0.0895250656 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
9 Hb_004410_070 0.0898678769 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
10 Hb_001511_110 0.0901860961 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
11 Hb_003117_020 0.0910346473 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
12 Hb_000236_220 0.094472962 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
13 Hb_000556_170 0.0960173287 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
14 Hb_002542_130 0.0962914647 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
15 Hb_005104_010 0.0969474006 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
16 Hb_000260_640 0.0969612066 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
17 Hb_002282_060 0.0977676797 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
18 Hb_014834_060 0.0982932417 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
19 Hb_009028_010 0.0992491838 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
20 Hb_007894_130 0.1010275432 - - hypothetical protein RCOM_0584960 [Ricinus communis]

Gene co-expression network

sample Hb_004371_010 Hb_004371_010 Hb_000094_320 Hb_000094_320 Hb_004371_010--Hb_000094_320 Hb_000061_490 Hb_000061_490 Hb_004371_010--Hb_000061_490 Hb_000768_180 Hb_000768_180 Hb_004371_010--Hb_000768_180 Hb_144744_010 Hb_144744_010 Hb_004371_010--Hb_144744_010 Hb_000347_120 Hb_000347_120 Hb_004371_010--Hb_000347_120 Hb_000735_160 Hb_000735_160 Hb_004371_010--Hb_000735_160 Hb_000094_320--Hb_000347_120 Hb_007193_110 Hb_007193_110 Hb_000094_320--Hb_007193_110 Hb_012114_050 Hb_012114_050 Hb_000094_320--Hb_012114_050 Hb_000526_060 Hb_000526_060 Hb_000094_320--Hb_000526_060 Hb_004410_070 Hb_004410_070 Hb_000094_320--Hb_004410_070 Hb_000264_080 Hb_000264_080 Hb_000061_490--Hb_000264_080 Hb_007894_130 Hb_007894_130 Hb_000061_490--Hb_007894_130 Hb_000061_490--Hb_004410_070 Hb_009780_100 Hb_009780_100 Hb_000061_490--Hb_009780_100 Hb_009771_100 Hb_009771_100 Hb_000061_490--Hb_009771_100 Hb_005260_010 Hb_005260_010 Hb_000768_180--Hb_005260_010 Hb_000862_040 Hb_000862_040 Hb_000768_180--Hb_000862_040 Hb_000556_170 Hb_000556_170 Hb_000768_180--Hb_000556_170 Hb_005542_050 Hb_005542_050 Hb_000768_180--Hb_005542_050 Hb_000236_220 Hb_000236_220 Hb_000768_180--Hb_000236_220 Hb_010712_090 Hb_010712_090 Hb_000768_180--Hb_010712_090 Hb_009028_010 Hb_009028_010 Hb_144744_010--Hb_009028_010 Hb_000236_410 Hb_000236_410 Hb_144744_010--Hb_000236_410 Hb_001935_140 Hb_001935_140 Hb_144744_010--Hb_001935_140 Hb_000406_110 Hb_000406_110 Hb_144744_010--Hb_000406_110 Hb_003060_090 Hb_003060_090 Hb_144744_010--Hb_003060_090 Hb_000373_100 Hb_000373_100 Hb_000347_120--Hb_000373_100 Hb_005389_160 Hb_005389_160 Hb_000347_120--Hb_005389_160 Hb_010417_070 Hb_010417_070 Hb_000347_120--Hb_010417_070 Hb_004440_040 Hb_004440_040 Hb_000347_120--Hb_004440_040 Hb_000347_120--Hb_004410_070 Hb_010487_020 Hb_010487_020 Hb_000735_160--Hb_010487_020 Hb_000735_160--Hb_000347_120 Hb_000735_160--Hb_000094_320 Hb_000925_160 Hb_000925_160 Hb_000735_160--Hb_000925_160 Hb_001080_230 Hb_001080_230 Hb_000735_160--Hb_001080_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.9906 87.4648 25.5908 18.8241 32.567 42.828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4738 24.267 17.7642 29.6816 23.5061

CAGE analysis