Hb_004374_020

Information

Type -
Description -
Location Contig4374: 51278-54869
Sequence    

Annotation

kegg
ID rcu:RCOM_1688090
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_012086832.1
description PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
swissprot
ID Q40353
description Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1
trembl
ID A0A067JN25
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_20547 PE=3 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase homolog mmk2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42490: 51416-52577 , PASA_asmbl_42491: 52582-54943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_020 0.0 - - PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
2 Hb_012807_030 0.112094269 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
3 Hb_004920_020 0.126055993 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
4 Hb_124677_010 0.1309889481 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000574_010 0.1409115961 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
6 Hb_000002_140 0.143203587 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
7 Hb_000866_060 0.146151378 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
8 Hb_000128_040 0.1506858587 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
9 Hb_002762_050 0.1516451592 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
10 Hb_001102_130 0.1536077726 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
11 Hb_001409_080 0.1578184593 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
12 Hb_008143_010 0.1578983574 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
13 Hb_005575_010 0.158050026 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
14 Hb_001159_070 0.1584029278 - - DNA photolyase, putative [Ricinus communis]
15 Hb_010678_010 0.1626190453 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
16 Hb_145188_010 0.1644043992 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
17 Hb_000950_020 0.1662674734 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
18 Hb_000008_160 0.1683167087 - - carboxy-lyase, putative [Ricinus communis]
19 Hb_002162_020 0.169023286 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
20 Hb_006267_040 0.171545696 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004374_020 Hb_004374_020 Hb_012807_030 Hb_012807_030 Hb_004374_020--Hb_012807_030 Hb_004920_020 Hb_004920_020 Hb_004374_020--Hb_004920_020 Hb_124677_010 Hb_124677_010 Hb_004374_020--Hb_124677_010 Hb_000574_010 Hb_000574_010 Hb_004374_020--Hb_000574_010 Hb_000002_140 Hb_000002_140 Hb_004374_020--Hb_000002_140 Hb_000866_060 Hb_000866_060 Hb_004374_020--Hb_000866_060 Hb_002762_050 Hb_002762_050 Hb_012807_030--Hb_002762_050 Hb_012807_030--Hb_124677_010 Hb_012807_030--Hb_000002_140 Hb_000008_160 Hb_000008_160 Hb_012807_030--Hb_000008_160 Hb_012807_030--Hb_000866_060 Hb_000128_040 Hb_000128_040 Hb_012807_030--Hb_000128_040 Hb_004920_020--Hb_000128_040 Hb_000950_020 Hb_000950_020 Hb_004920_020--Hb_000950_020 Hb_005000_110 Hb_005000_110 Hb_004920_020--Hb_005000_110 Hb_000544_070 Hb_000544_070 Hb_004920_020--Hb_000544_070 Hb_005211_080 Hb_005211_080 Hb_004920_020--Hb_005211_080 Hb_000300_110 Hb_000300_110 Hb_004920_020--Hb_000300_110 Hb_101133_030 Hb_101133_030 Hb_124677_010--Hb_101133_030 Hb_124677_010--Hb_000866_060 Hb_015044_010 Hb_015044_010 Hb_124677_010--Hb_015044_010 Hb_000749_140 Hb_000749_140 Hb_124677_010--Hb_000749_140 Hb_124677_010--Hb_000128_040 Hb_002701_060 Hb_002701_060 Hb_000574_010--Hb_002701_060 Hb_008143_010 Hb_008143_010 Hb_000574_010--Hb_008143_010 Hb_005575_010 Hb_005575_010 Hb_000574_010--Hb_005575_010 Hb_010678_010 Hb_010678_010 Hb_000574_010--Hb_010678_010 Hb_006053_020 Hb_006053_020 Hb_000574_010--Hb_006053_020 Hb_015978_090 Hb_015978_090 Hb_000574_010--Hb_015978_090 Hb_002162_020 Hb_002162_020 Hb_000002_140--Hb_002162_020 Hb_001089_010 Hb_001089_010 Hb_000002_140--Hb_001089_010 Hb_140249_020 Hb_140249_020 Hb_000002_140--Hb_140249_020 Hb_000002_140--Hb_000008_160 Hb_000007_270 Hb_000007_270 Hb_000002_140--Hb_000007_270 Hb_006267_040 Hb_006267_040 Hb_000866_060--Hb_006267_040 Hb_127263_010 Hb_127263_010 Hb_000866_060--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000866_060--Hb_000239_050 Hb_000866_060--Hb_015044_010 Hb_001409_080 Hb_001409_080 Hb_000866_060--Hb_001409_080 Hb_000866_060--Hb_000300_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0598913 0.218632 9.04622 1.52225 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.238961 0.2417 0 1.59901 9.68691

CAGE analysis