Hb_004374_040

Information

Type -
Description -
Location Contig4374: 69204-71122
Sequence    

Annotation

kegg
ID rcu:RCOM_1688060
description Beta-carotene hydroxylase, putative
nr
ID XP_012086836.1
description PREDICTED: beta-carotene 3-hydroxylase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SZZ8
description Beta-carotene 3-hydroxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BETA-OHASE 1 PE=1 SV=1
trembl
ID A0A067K0R4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20550 PE=4 SV=1
Gene Ontology
ID GO:0016020
description beta-carotene hydroxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_040 0.0 - - PREDICTED: beta-carotene 3-hydroxylase, chloroplastic-like [Jatropha curcas]
2 Hb_004785_170 0.0781559462 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_011314_010 0.1053751897 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
4 Hb_002213_050 0.1092431136 - - PREDICTED: uncharacterized protein LOC105630318 isoform X3 [Jatropha curcas]
5 Hb_011985_020 0.1278779431 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
6 Hb_000563_570 0.1369238228 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
7 Hb_009225_070 0.1401479345 - - tonoplast intrinsic protein, putative [Ricinus communis]
8 Hb_103632_010 0.1405240712 - - triacylglycerol lipase, putative [Ricinus communis]
9 Hb_010217_020 0.1448735429 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
10 Hb_003126_120 0.1453178027 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
11 Hb_000468_050 0.1454018509 - - -
12 Hb_001141_010 0.1476430333 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
13 Hb_000090_020 0.1534163207 - - acyltransferase, putative [Ricinus communis]
14 Hb_000349_280 0.1580222389 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001318_230 0.1581042536 - - Boron transporter, putative [Ricinus communis]
16 Hb_008948_010 0.1581267825 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
17 Hb_003582_030 0.1614385761 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
18 Hb_012553_030 0.162113423 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_000152_520 0.1623598941 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
20 Hb_000638_110 0.1623845756 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]

Gene co-expression network

sample Hb_004374_040 Hb_004374_040 Hb_004785_170 Hb_004785_170 Hb_004374_040--Hb_004785_170 Hb_011314_010 Hb_011314_010 Hb_004374_040--Hb_011314_010 Hb_002213_050 Hb_002213_050 Hb_004374_040--Hb_002213_050 Hb_011985_020 Hb_011985_020 Hb_004374_040--Hb_011985_020 Hb_000563_570 Hb_000563_570 Hb_004374_040--Hb_000563_570 Hb_009225_070 Hb_009225_070 Hb_004374_040--Hb_009225_070 Hb_008948_010 Hb_008948_010 Hb_004785_170--Hb_008948_010 Hb_004785_170--Hb_011985_020 Hb_000468_050 Hb_000468_050 Hb_004785_170--Hb_000468_050 Hb_004785_170--Hb_011314_010 Hb_001318_230 Hb_001318_230 Hb_004785_170--Hb_001318_230 Hb_011314_010--Hb_009225_070 Hb_022693_090 Hb_022693_090 Hb_011314_010--Hb_022693_090 Hb_003126_120 Hb_003126_120 Hb_011314_010--Hb_003126_120 Hb_003582_030 Hb_003582_030 Hb_011314_010--Hb_003582_030 Hb_002053_170 Hb_002053_170 Hb_002213_050--Hb_002053_170 Hb_002213_050--Hb_004785_170 Hb_002213_050--Hb_003126_120 Hb_000046_390 Hb_000046_390 Hb_002213_050--Hb_000046_390 Hb_000152_520 Hb_000152_520 Hb_002213_050--Hb_000152_520 Hb_000816_150 Hb_000816_150 Hb_011985_020--Hb_000816_150 Hb_011985_020--Hb_008948_010 Hb_017700_030 Hb_017700_030 Hb_011985_020--Hb_017700_030 Hb_004450_090 Hb_004450_090 Hb_011985_020--Hb_004450_090 Hb_114733_010 Hb_114733_010 Hb_011985_020--Hb_114733_010 Hb_000840_220 Hb_000840_220 Hb_000563_570--Hb_000840_220 Hb_001013_060 Hb_001013_060 Hb_000563_570--Hb_001013_060 Hb_006890_050 Hb_006890_050 Hb_000563_570--Hb_006890_050 Hb_000705_070 Hb_000705_070 Hb_000563_570--Hb_000705_070 Hb_012553_030 Hb_012553_030 Hb_000563_570--Hb_012553_030 Hb_001775_060 Hb_001775_060 Hb_000563_570--Hb_001775_060 Hb_009225_070--Hb_000468_050 Hb_002592_070 Hb_002592_070 Hb_009225_070--Hb_002592_070 Hb_009225_070--Hb_000816_150 Hb_009225_070--Hb_012553_030 Hb_009225_070--Hb_022693_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.303381 0.0158139 0.774802 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0578053 0.148134

CAGE analysis