Hb_004374_060

Information

Type -
Description -
Location Contig4374: 73027-76622
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13140g
description POPTRDRAFT_757549; hypothetical protein
nr
ID XP_002303603.2
description hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GWU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13140g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42494: 76645-77672
cDNA
(Sanger)
(ID:Location)		 023_E04r.ab1: 72457-73409

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_060 0.0 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
2 Hb_004204_190 0.1701633041 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
3 Hb_015456_020 0.1773986738 - - -
4 Hb_000300_380 0.1821014064 - - -
5 Hb_004374_050 0.2018412897 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004032_240 0.2104476524 - - electron transporter, putative [Ricinus communis]
7 Hb_010680_010 0.2166533881 - - -
8 Hb_001220_040 0.2169612992 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
9 Hb_000098_190 0.2188684593 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
10 Hb_000326_010 0.2195015226 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
11 Hb_000173_100 0.2195857579 - - -
12 Hb_000659_030 0.2213627408 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
13 Hb_000723_310 0.2239243622 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000729_060 0.223944775 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002045_270 0.226549408 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
16 Hb_002784_040 0.2273398639 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
17 Hb_054301_010 0.2281788005 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
18 Hb_010362_020 0.2282744404 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
19 Hb_005333_040 0.2284132498 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
20 Hb_019219_020 0.2292861603 - - profilin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_004374_060 Hb_004374_060 Hb_004204_190 Hb_004204_190 Hb_004374_060--Hb_004204_190 Hb_015456_020 Hb_015456_020 Hb_004374_060--Hb_015456_020 Hb_000300_380 Hb_000300_380 Hb_004374_060--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_004374_060--Hb_004374_050 Hb_004032_240 Hb_004032_240 Hb_004374_060--Hb_004032_240 Hb_010680_010 Hb_010680_010 Hb_004374_060--Hb_010680_010 Hb_005333_040 Hb_005333_040 Hb_004204_190--Hb_005333_040 Hb_004204_190--Hb_015456_020 Hb_004204_190--Hb_000300_380 Hb_006452_060 Hb_006452_060 Hb_004204_190--Hb_006452_060 Hb_001220_040 Hb_001220_040 Hb_004204_190--Hb_001220_040 Hb_001214_030 Hb_001214_030 Hb_004204_190--Hb_001214_030 Hb_015456_020--Hb_000300_380 Hb_015456_020--Hb_005333_040 Hb_001158_030 Hb_001158_030 Hb_015456_020--Hb_001158_030 Hb_000183_070 Hb_000183_070 Hb_015456_020--Hb_000183_070 Hb_000014_100 Hb_000014_100 Hb_015456_020--Hb_000014_100 Hb_000922_150 Hb_000922_150 Hb_000300_380--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000300_380--Hb_017438_020 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_000300_380--Hb_005333_040 Hb_001769_020 Hb_001769_020 Hb_004374_050--Hb_001769_020 Hb_002374_440 Hb_002374_440 Hb_004374_050--Hb_002374_440 Hb_005228_100 Hb_005228_100 Hb_004374_050--Hb_005228_100 Hb_000258_130 Hb_000258_130 Hb_004374_050--Hb_000258_130 Hb_010068_030 Hb_010068_030 Hb_004374_050--Hb_010068_030 Hb_004645_040 Hb_004645_040 Hb_004374_050--Hb_004645_040 Hb_004032_240--Hb_000958_010 Hb_010931_110 Hb_010931_110 Hb_004032_240--Hb_010931_110 Hb_003893_170 Hb_003893_170 Hb_004032_240--Hb_003893_170 Hb_008453_020 Hb_008453_020 Hb_004032_240--Hb_008453_020 Hb_019153_040 Hb_019153_040 Hb_004032_240--Hb_019153_040 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030 Hb_142392_010 Hb_142392_010 Hb_010680_010--Hb_142392_010 Hb_010680_010--Hb_001158_030 Hb_010680_010--Hb_015456_020 Hb_145761_010 Hb_145761_010 Hb_010680_010--Hb_145761_010 Hb_005214_110 Hb_005214_110 Hb_010680_010--Hb_005214_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29101 1.172 0.0538116 0.623516 12.277 2.34332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.25207 7.76356 1.58089 1.32033 0.790371

CAGE analysis