Hb_004374_080

Information

Type -
Description -
Location Contig4374: 83064-85936
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13130g
description POPTRDRAFT_554403; fringe-related family protein
nr
ID XP_012086839.1
description PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20554 PE=4 SV=1
Gene Ontology
ID GO:0016740
description fringe-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42495: 82849-83370 , PASA_asmbl_42497: 84932-85890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_080 0.0 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
2 Hb_002000_060 0.1066735793 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
3 Hb_000270_160 0.1271127225 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
4 Hb_000139_230 0.1276765887 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
5 Hb_003872_010 0.1282228207 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]
6 Hb_012404_070 0.1311305781 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
7 Hb_000566_100 0.1383985705 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
8 Hb_000850_050 0.1396901755 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
9 Hb_029904_020 0.1402261589 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
10 Hb_003436_050 0.1407694534 - - arf gtpase-activating protein, putative [Ricinus communis]
11 Hb_000100_130 0.1427474787 - - hypothetical protein VITISV_026702 [Vitis vinifera]
12 Hb_074197_020 0.1429522534 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
13 Hb_001163_120 0.1455952561 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_004657_090 0.1466496586 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
15 Hb_001948_130 0.1474183752 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
16 Hb_001021_220 0.1504689864 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
17 Hb_000336_270 0.1505534369 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_003656_180 0.1511959511 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
19 Hb_001269_210 0.1525069121 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
20 Hb_000031_280 0.152575713 - - -

Gene co-expression network

sample Hb_004374_080 Hb_004374_080 Hb_002000_060 Hb_002000_060 Hb_004374_080--Hb_002000_060 Hb_000270_160 Hb_000270_160 Hb_004374_080--Hb_000270_160 Hb_000139_230 Hb_000139_230 Hb_004374_080--Hb_000139_230 Hb_003872_010 Hb_003872_010 Hb_004374_080--Hb_003872_010 Hb_012404_070 Hb_012404_070 Hb_004374_080--Hb_012404_070 Hb_000566_100 Hb_000566_100 Hb_004374_080--Hb_000566_100 Hb_000336_270 Hb_000336_270 Hb_002000_060--Hb_000336_270 Hb_147505_010 Hb_147505_010 Hb_002000_060--Hb_147505_010 Hb_000563_600 Hb_000563_600 Hb_002000_060--Hb_000563_600 Hb_002000_060--Hb_000139_230 Hb_001163_120 Hb_001163_120 Hb_002000_060--Hb_001163_120 Hb_000031_280 Hb_000031_280 Hb_000270_160--Hb_000031_280 Hb_000935_090 Hb_000935_090 Hb_000270_160--Hb_000935_090 Hb_002681_170 Hb_002681_170 Hb_000270_160--Hb_002681_170 Hb_000879_160 Hb_000879_160 Hb_000270_160--Hb_000879_160 Hb_000347_270 Hb_000347_270 Hb_000270_160--Hb_000347_270 Hb_000270_160--Hb_000139_230 Hb_001021_220 Hb_001021_220 Hb_000139_230--Hb_001021_220 Hb_006787_060 Hb_006787_060 Hb_000139_230--Hb_006787_060 Hb_029904_020 Hb_029904_020 Hb_000139_230--Hb_029904_020 Hb_000139_230--Hb_000935_090 Hb_001377_110 Hb_001377_110 Hb_000139_230--Hb_001377_110 Hb_000139_230--Hb_000879_160 Hb_007803_060 Hb_007803_060 Hb_003872_010--Hb_007803_060 Hb_000270_870 Hb_000270_870 Hb_003872_010--Hb_000270_870 Hb_003872_010--Hb_002000_060 Hb_000661_110 Hb_000661_110 Hb_003872_010--Hb_000661_110 Hb_003872_010--Hb_147505_010 Hb_003436_050 Hb_003436_050 Hb_012404_070--Hb_003436_050 Hb_012404_070--Hb_001163_120 Hb_005408_020 Hb_005408_020 Hb_012404_070--Hb_005408_020 Hb_008246_030 Hb_008246_030 Hb_012404_070--Hb_008246_030 Hb_002249_120 Hb_002249_120 Hb_012404_070--Hb_002249_120 Hb_011609_170 Hb_011609_170 Hb_012404_070--Hb_011609_170 Hb_000566_100--Hb_002249_120 Hb_018954_020 Hb_018954_020 Hb_000566_100--Hb_018954_020 Hb_000566_100--Hb_002681_170 Hb_001050_010 Hb_001050_010 Hb_000566_100--Hb_001050_010 Hb_008556_030 Hb_008556_030 Hb_000566_100--Hb_008556_030 Hb_002559_040 Hb_002559_040 Hb_000566_100--Hb_002559_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7236 9.21173 6.73319 14.2481 10.7365 19.1319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22226 2.82855 4.98443 3.26431 11.1495

CAGE analysis