Hb_004374_110

Information

Type -
Description -
Location Contig4374: 106998-112339
Sequence    

Annotation

kegg
ID vvi:104881089
description uncharacterized LOC104881089
nr
ID XP_012086841.1
description PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20557 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42505: 107999-110153 , PASA_asmbl_42506: 106863-108527 , PASA_asmbl_42507: 110230-110550 , PASA_asmbl_42508: 110631-112326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_110 0.0 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
2 Hb_002235_200 0.0458101556 - - pattern formation protein, putative [Ricinus communis]
3 Hb_006839_010 0.058909546 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
4 Hb_001157_240 0.0695659236 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
5 Hb_012632_010 0.0721140568 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
6 Hb_002890_130 0.0721499758 - - tip120, putative [Ricinus communis]
7 Hb_001377_100 0.0733988968 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
8 Hb_004679_030 0.0734834619 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
9 Hb_002539_070 0.0737929329 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
10 Hb_001377_350 0.0746014418 - - PREDICTED: exportin-2 [Jatropha curcas]
11 Hb_000181_340 0.0752976436 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_003040_050 0.0753356103 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
13 Hb_062226_070 0.0759692866 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
14 Hb_001999_290 0.0764586357 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
15 Hb_000174_270 0.07781959 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
16 Hb_005977_070 0.0779036664 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_000028_130 0.0789797922 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
18 Hb_000059_230 0.0790106371 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
19 Hb_001635_120 0.0797805455 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
20 Hb_009288_020 0.0800206821 - - PREDICTED: protein FRIGIDA [Jatropha curcas]

Gene co-expression network

sample Hb_004374_110 Hb_004374_110 Hb_002235_200 Hb_002235_200 Hb_004374_110--Hb_002235_200 Hb_006839_010 Hb_006839_010 Hb_004374_110--Hb_006839_010 Hb_001157_240 Hb_001157_240 Hb_004374_110--Hb_001157_240 Hb_012632_010 Hb_012632_010 Hb_004374_110--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_004374_110--Hb_002890_130 Hb_001377_100 Hb_001377_100 Hb_004374_110--Hb_001377_100 Hb_003607_070 Hb_003607_070 Hb_002235_200--Hb_003607_070 Hb_002235_200--Hb_006839_010 Hb_140627_020 Hb_140627_020 Hb_002235_200--Hb_140627_020 Hb_000123_180 Hb_000123_180 Hb_002235_200--Hb_000123_180 Hb_003125_170 Hb_003125_170 Hb_002235_200--Hb_003125_170 Hb_000059_230 Hb_000059_230 Hb_006839_010--Hb_000059_230 Hb_009288_020 Hb_009288_020 Hb_006839_010--Hb_009288_020 Hb_003040_050 Hb_003040_050 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_006839_010--Hb_001377_100 Hb_001999_290 Hb_001999_290 Hb_001157_240--Hb_001999_290 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_005736_020 Hb_005736_020 Hb_001157_240--Hb_005736_020 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001008_120 Hb_001008_120 Hb_001157_240--Hb_001008_120 Hb_003058_260 Hb_003058_260 Hb_012632_010--Hb_003058_260 Hb_002071_070 Hb_002071_070 Hb_012632_010--Hb_002071_070 Hb_012632_010--Hb_002890_130 Hb_000856_040 Hb_000856_040 Hb_012632_010--Hb_000856_040 Hb_002830_010 Hb_002830_010 Hb_012632_010--Hb_002830_010 Hb_011819_020 Hb_011819_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_001377_100--Hb_000059_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.02306 11.1526 6.86061 9.96056 7.86173 7.44806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18482 5.27263 10.2098 9.3799 15.6007

CAGE analysis