Hb_004374_140

Information

Type -
Description -
Location Contig4374: 125138-129445
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13070g
description POPTRDRAFT_646651; hypothetical protein
nr
ID XP_002303601.2
description hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PCV7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13070g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42511: 125166-129507 , PASA_asmbl_42513: 127477-127787
cDNA
(Sanger)
(ID:Location)		 019_D03.ab1: 125574-129507 , 023_J02.ab1: 125774-129507 , 036_J15.ab1: 125606-129507 , 044_C23.ab1: 125618-129507

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_140 0.0 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
2 Hb_008544_010 0.0527142637 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
3 Hb_001461_010 0.0569475193 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
4 Hb_004336_050 0.0634388748 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
5 Hb_180301_010 0.0718599199 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
6 Hb_002631_020 0.0738014433 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
7 Hb_124755_010 0.0785966845 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
8 Hb_000172_030 0.0791113947 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_007926_060 0.0791268614 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
10 Hb_010042_010 0.084912958 - - Urease accessory protein ureD, putative [Ricinus communis]
11 Hb_000364_020 0.0854426448 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
12 Hb_004449_200 0.0867558206 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
13 Hb_000024_030 0.0882647597 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
14 Hb_001307_090 0.0889809285 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
15 Hb_000975_110 0.0896927272 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
16 Hb_000963_180 0.0907899846 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
17 Hb_001191_090 0.0911425507 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
18 Hb_000224_120 0.0931756403 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
19 Hb_010174_020 0.094571507 - - protein binding protein, putative [Ricinus communis]
20 Hb_002878_010 0.0947706389 - - -

Gene co-expression network

sample Hb_004374_140 Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_004374_140--Hb_008544_010 Hb_001461_010 Hb_001461_010 Hb_004374_140--Hb_001461_010 Hb_004336_050 Hb_004336_050 Hb_004374_140--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_004374_140--Hb_180301_010 Hb_002631_020 Hb_002631_020 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_008544_010--Hb_001461_010 Hb_000172_030 Hb_000172_030 Hb_008544_010--Hb_000172_030 Hb_008544_010--Hb_004336_050 Hb_001191_090 Hb_001191_090 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_180301_010--Hb_000172_030 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_003018_050 Hb_003018_050 Hb_002631_020--Hb_003018_050 Hb_004449_200 Hb_004449_200 Hb_002631_020--Hb_004449_200 Hb_006452_040 Hb_006452_040 Hb_002631_020--Hb_006452_040 Hb_000122_020 Hb_000122_020 Hb_002631_020--Hb_000122_020 Hb_002631_020--Hb_001191_090 Hb_000024_030 Hb_000024_030 Hb_124755_010--Hb_000024_030 Hb_002471_080 Hb_002471_080 Hb_124755_010--Hb_002471_080 Hb_124755_010--Hb_001307_090 Hb_000975_110 Hb_000975_110 Hb_124755_010--Hb_000975_110 Hb_124755_010--Hb_000122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4002 14.5274 14.9754 64.613 41.6405 72.6754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
114.855 127.154 106.937 29.7246 29.1207

CAGE analysis