Hb_004374_160

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4374: 144987-148532
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09450g
description POPTRDRAFT_1066896; regulator of anthocyanin biosynthesis pathway family protein
nr
ID KDP25431.1
description hypothetical protein JCGZ_20587 [Jatropha curcas]
swissprot
ID Q9FN69
description Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1
trembl
ID A0A067JN60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20587 PE=4 SV=1
Gene Ontology
ID GO:0003677
description regulator of anthocyanin biosynthesis pathway family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42516: 144971-148408 , PASA_asmbl_42517: 144229-145154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_160 0.0 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
2 Hb_001488_350 0.1093293735 - - conserved hypothetical protein [Ricinus communis]
3 Hb_039435_010 0.1102959806 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
4 Hb_000621_030 0.1173043768 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
5 Hb_004881_070 0.1203644391 - - ATP binding protein, putative [Ricinus communis]
6 Hb_002817_050 0.1363248088 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
7 Hb_005493_010 0.1407001186 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
8 Hb_162174_010 0.1510693658 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_000181_220 0.1533106603 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
10 Hb_024570_030 0.1549027903 - - cytochrome P450, putative [Ricinus communis]
11 Hb_004116_050 0.156049997 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
12 Hb_001278_090 0.1580506351 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_002949_020 0.16233929 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
14 Hb_074197_030 0.1639922045 - - unnamed protein product [Vitis vinifera]
15 Hb_143766_070 0.1663374369 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
16 Hb_000416_090 0.166475172 - - Aquaporin NIP1.1, putative [Ricinus communis]
17 Hb_002001_030 0.167088527 - - Plasma membrane ATPase 4 [Gossypium arboreum]
18 Hb_002170_080 0.1683004499 - - phosphate transporter [Manihot esculenta]
19 Hb_000140_500 0.170008675 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_003052_020 0.172062258 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004374_160 Hb_004374_160 Hb_001488_350 Hb_001488_350 Hb_004374_160--Hb_001488_350 Hb_039435_010 Hb_039435_010 Hb_004374_160--Hb_039435_010 Hb_000621_030 Hb_000621_030 Hb_004374_160--Hb_000621_030 Hb_004881_070 Hb_004881_070 Hb_004374_160--Hb_004881_070 Hb_002817_050 Hb_002817_050 Hb_004374_160--Hb_002817_050 Hb_005493_010 Hb_005493_010 Hb_004374_160--Hb_005493_010 Hb_000181_220 Hb_000181_220 Hb_001488_350--Hb_000181_220 Hb_001488_350--Hb_039435_010 Hb_000416_090 Hb_000416_090 Hb_001488_350--Hb_000416_090 Hb_001488_350--Hb_000621_030 Hb_001278_090 Hb_001278_090 Hb_001488_350--Hb_001278_090 Hb_024570_030 Hb_024570_030 Hb_039435_010--Hb_024570_030 Hb_004116_050 Hb_004116_050 Hb_039435_010--Hb_004116_050 Hb_119443_010 Hb_119443_010 Hb_039435_010--Hb_119443_010 Hb_001244_070 Hb_001244_070 Hb_039435_010--Hb_001244_070 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_000621_030--Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_000621_030--Hb_162174_010 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_000621_030--Hb_004116_050 Hb_004881_070--Hb_162174_010 Hb_001541_130 Hb_001541_130 Hb_004881_070--Hb_001541_130 Hb_001516_010 Hb_001516_010 Hb_004881_070--Hb_001516_010 Hb_000816_240 Hb_000816_240 Hb_004881_070--Hb_000816_240 Hb_002817_050--Hb_005493_010 Hb_000901_010 Hb_000901_010 Hb_002817_050--Hb_000901_010 Hb_002817_050--Hb_000181_220 Hb_010557_020 Hb_010557_020 Hb_002817_050--Hb_010557_020 Hb_000162_200 Hb_000162_200 Hb_002817_050--Hb_000162_200 Hb_030827_010 Hb_030827_010 Hb_005493_010--Hb_030827_010 Hb_005493_010--Hb_001278_090 Hb_002949_020 Hb_002949_020 Hb_005493_010--Hb_002949_020 Hb_002235_110 Hb_002235_110 Hb_005493_010--Hb_002235_110 Hb_074197_030 Hb_074197_030 Hb_005493_010--Hb_074197_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106317 1.82467 32.083 33.1924 0.0307262 0.0155026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0186311 5.93746 0.0837573 15.8757 46.597

CAGE analysis