Hb_004374_170

Information

Type -
Description -
Location Contig4374: 149974-151075
Sequence    

Annotation

kegg
ID rcu:RCOM_1686980
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_012086892.1
description PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
swissprot
ID O04707
description Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1
trembl
ID A0A067JZJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20586 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 20-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42518: 150330-150506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_170 0.0 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
2 Hb_002804_070 0.0674075115 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
3 Hb_006951_010 0.0986699183 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
4 Hb_001953_010 0.1034326042 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
5 Hb_000120_600 0.1036271757 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
6 Hb_017549_010 0.1051848208 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
7 Hb_005946_200 0.1052906898 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
8 Hb_001221_050 0.1059184731 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
9 Hb_002303_050 0.1090085483 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
10 Hb_002186_030 0.109919344 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
11 Hb_004474_070 0.1185015484 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
12 Hb_003427_020 0.1213693494 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
13 Hb_001115_100 0.1273806131 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
14 Hb_002597_030 0.1324361818 - - -
15 Hb_001675_350 0.1324791896 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
16 Hb_001022_070 0.1335002017 - - cell wall invertase [Manihot esculenta]
17 Hb_128216_010 0.1344066359 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
18 Hb_000000_320 0.1369126309 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
19 Hb_112145_010 0.1412809023 - - kinase, putative [Ricinus communis]
20 Hb_150573_010 0.1412923781 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004374_170 Hb_004374_170 Hb_002804_070 Hb_002804_070 Hb_004374_170--Hb_002804_070 Hb_006951_010 Hb_006951_010 Hb_004374_170--Hb_006951_010 Hb_001953_010 Hb_001953_010 Hb_004374_170--Hb_001953_010 Hb_000120_600 Hb_000120_600 Hb_004374_170--Hb_000120_600 Hb_017549_010 Hb_017549_010 Hb_004374_170--Hb_017549_010 Hb_005946_200 Hb_005946_200 Hb_004374_170--Hb_005946_200 Hb_002804_070--Hb_001953_010 Hb_002804_070--Hb_005946_200 Hb_002804_070--Hb_000120_600 Hb_002303_050 Hb_002303_050 Hb_002804_070--Hb_002303_050 Hb_004474_070 Hb_004474_070 Hb_002804_070--Hb_004474_070 Hb_002186_030 Hb_002186_030 Hb_006951_010--Hb_002186_030 Hb_112145_010 Hb_112145_010 Hb_006951_010--Hb_112145_010 Hb_000201_070 Hb_000201_070 Hb_006951_010--Hb_000201_070 Hb_006951_010--Hb_002804_070 Hb_002170_010 Hb_002170_010 Hb_006951_010--Hb_002170_010 Hb_001953_010--Hb_004474_070 Hb_000000_320 Hb_000000_320 Hb_001953_010--Hb_000000_320 Hb_001953_010--Hb_002303_050 Hb_001022_070 Hb_001022_070 Hb_001953_010--Hb_001022_070 Hb_128216_010 Hb_128216_010 Hb_001953_010--Hb_128216_010 Hb_001856_130 Hb_001856_130 Hb_000120_600--Hb_001856_130 Hb_000120_600--Hb_001953_010 Hb_000120_600--Hb_017549_010 Hb_000120_600--Hb_004474_070 Hb_001115_100 Hb_001115_100 Hb_017549_010--Hb_001115_100 Hb_002597_030 Hb_002597_030 Hb_017549_010--Hb_002597_030 Hb_017549_010--Hb_002804_070 Hb_029576_070 Hb_029576_070 Hb_017549_010--Hb_029576_070 Hb_001221_050 Hb_001221_050 Hb_005946_200--Hb_001221_050 Hb_005946_200--Hb_002303_050 Hb_006153_020 Hb_006153_020 Hb_005946_200--Hb_006153_020 Hb_005946_200--Hb_001022_070 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203969 5.06023 3.19119 8.90526 0.0439647 0.0755757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0985446 1.08414

CAGE analysis