Hb_004374_200

Information

Type -
Description -
Location Contig4374: 186609-188963
Sequence    

Annotation

kegg
ID mpr:MPER_12279
description hypothetical protein
nr
ID CAK22274.1
description putative GMP synthase [Oxybasis rubra]
swissprot
ID Q5WJI0
description GMP synthase [glutamine-hydrolyzing] OS=Bacillus clausii (strain KSM-K16) GN=guaA PE=3 SV=1
trembl
ID Q1H8R7
description Putative GMP synthase (Fragment) OS=Oxybasis rubra GN=gmps PE=2 SV=1
Gene Ontology
ID GO:0005829
description gmp synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42519: 186592-188965
cDNA
(Sanger)
(ID:Location)		 031_F02.ab1: 187382-188961

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_200 0.0 - - putative GMP synthase [Oxybasis rubra]
2 Hb_007101_100 0.0721611757 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
3 Hb_001454_140 0.0751830549 - - protein arginine n-methyltransferase, putative [Ricinus communis]
4 Hb_005686_110 0.0837668861 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
5 Hb_002374_160 0.0839439058 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
6 Hb_000620_080 0.0841912413 - - hypothetical protein F775_32679 [Aegilops tauschii]
7 Hb_001124_210 0.0893249758 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000156_130 0.0937521071 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
9 Hb_006447_010 0.0951813277 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
10 Hb_004724_100 0.0953719964 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
11 Hb_000371_080 0.0973422572 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
12 Hb_002232_170 0.0991791248 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
13 Hb_001818_080 0.0997516279 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
14 Hb_001235_070 0.0998845279 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000808_040 0.1028506806 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
16 Hb_000771_100 0.1036018695 - - Os06g0527300 [Oryza sativa Japonica Group]
17 Hb_000676_290 0.1037441215 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
18 Hb_000200_210 0.1043628805 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004128_190 0.1046956871 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
20 Hb_001246_100 0.1048456426 - - Ras-related small GTP-binding family protein [Theobroma cacao]

Gene co-expression network

sample Hb_004374_200 Hb_004374_200 Hb_007101_100 Hb_007101_100 Hb_004374_200--Hb_007101_100 Hb_001454_140 Hb_001454_140 Hb_004374_200--Hb_001454_140 Hb_005686_110 Hb_005686_110 Hb_004374_200--Hb_005686_110 Hb_002374_160 Hb_002374_160 Hb_004374_200--Hb_002374_160 Hb_000620_080 Hb_000620_080 Hb_004374_200--Hb_000620_080 Hb_001124_210 Hb_001124_210 Hb_004374_200--Hb_001124_210 Hb_005063_040 Hb_005063_040 Hb_007101_100--Hb_005063_040 Hb_007101_100--Hb_001454_140 Hb_002232_170 Hb_002232_170 Hb_007101_100--Hb_002232_170 Hb_007101_100--Hb_002374_160 Hb_000963_190 Hb_000963_190 Hb_007101_100--Hb_000963_190 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_001454_140--Hb_002374_160 Hb_000371_080 Hb_000371_080 Hb_005686_110--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_005686_110--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_005686_110--Hb_022250_040 Hb_001235_070 Hb_001235_070 Hb_005686_110--Hb_001235_070 Hb_001369_050 Hb_001369_050 Hb_005686_110--Hb_001369_050 Hb_009711_030 Hb_009711_030 Hb_005686_110--Hb_009711_030 Hb_004128_190 Hb_004128_190 Hb_002374_160--Hb_004128_190 Hb_000245_130 Hb_000245_130 Hb_002374_160--Hb_000245_130 Hb_000398_180 Hb_000398_180 Hb_002374_160--Hb_000398_180 Hb_000720_120 Hb_000720_120 Hb_002374_160--Hb_000720_120 Hb_002374_160--Hb_002232_170 Hb_141131_010 Hb_141131_010 Hb_000620_080--Hb_141131_010 Hb_000620_080--Hb_004128_190 Hb_000620_080--Hb_001454_140 Hb_000620_080--Hb_001124_210 Hb_000771_100 Hb_000771_100 Hb_000620_080--Hb_000771_100 Hb_003847_080 Hb_003847_080 Hb_001124_210--Hb_003847_080 Hb_001124_210--Hb_141131_010 Hb_002078_150 Hb_002078_150 Hb_001124_210--Hb_002078_150 Hb_158092_070 Hb_158092_070 Hb_001124_210--Hb_158092_070 Hb_123475_010 Hb_123475_010 Hb_001124_210--Hb_123475_010 Hb_000363_500 Hb_000363_500 Hb_001124_210--Hb_000363_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2375 13.2651 5.95541 11.5182 18.7179 46.8865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.9733 32.7725 19.1802 9.48143 5.54995

CAGE analysis