Hb_004375_070

Information

Type -
Description -
Location Contig4375: 51136-53784
Sequence    

Annotation

kegg
ID tcc:TCM_018957
description Pollen Ole e 1 allergen and extensin family protein, putative
nr
ID XP_012083794.1
description PREDICTED: proline-rich protein 1-like [Jatropha curcas]
swissprot
ID Q9LZJ7
description Proline-rich protein 3 OS=Arabidopsis thaliana GN=PRP3 PE=2 SV=1
trembl
ID A0A067JZL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13969 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_070 0.0 - - PREDICTED: proline-rich protein 1-like [Jatropha curcas]
2 Hb_002301_130 0.3258264093 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
3 Hb_006018_070 0.3282576029 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
4 Hb_004453_010 0.329746801 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000679_050 0.3311441685 - - Alba DNA/RNA-binding protein [Theobroma cacao]
6 Hb_000300_080 0.3317506894 - - PREDICTED: probable S-sulfocysteine synthase, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_001251_080 0.3325428257 - - -
8 Hb_001558_090 0.3342564719 - - -
9 Hb_040153_010 0.3405904353 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
10 Hb_000427_060 0.3441902013 - - -
11 Hb_047823_010 0.3483479155 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
12 Hb_010812_040 0.3490423807 transcription factor TF Family: SNF2 PREDICTED: E3 ubiquitin-protein ligase SHPRH [Jatropha curcas]
13 Hb_002908_070 0.3528268162 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
14 Hb_002157_130 0.354254552 - - -
15 Hb_123199_010 0.3543594081 - - SRK protein [Brassica cretica]
16 Hb_011004_080 0.3562331372 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
17 Hb_000331_640 0.3570033032 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
18 Hb_002876_350 0.3581064378 - - PREDICTED: gibberellin-regulated protein 9-like isoform X2 [Citrus sinensis]
19 Hb_001712_070 0.3639345097 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
20 Hb_000011_570 0.3646275977 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]

Gene co-expression network

sample Hb_004375_070 Hb_004375_070 Hb_002301_130 Hb_002301_130 Hb_004375_070--Hb_002301_130 Hb_006018_070 Hb_006018_070 Hb_004375_070--Hb_006018_070 Hb_004453_010 Hb_004453_010 Hb_004375_070--Hb_004453_010 Hb_000679_050 Hb_000679_050 Hb_004375_070--Hb_000679_050 Hb_000300_080 Hb_000300_080 Hb_004375_070--Hb_000300_080 Hb_001251_080 Hb_001251_080 Hb_004375_070--Hb_001251_080 Hb_011004_080 Hb_011004_080 Hb_002301_130--Hb_011004_080 Hb_047823_010 Hb_047823_010 Hb_002301_130--Hb_047823_010 Hb_009486_150 Hb_009486_150 Hb_002301_130--Hb_009486_150 Hb_000331_640 Hb_000331_640 Hb_002301_130--Hb_000331_640 Hb_000062_650 Hb_000062_650 Hb_002301_130--Hb_000062_650 Hb_007044_130 Hb_007044_130 Hb_002301_130--Hb_007044_130 Hb_013691_020 Hb_013691_020 Hb_006018_070--Hb_013691_020 Hb_005511_100 Hb_005511_100 Hb_006018_070--Hb_005511_100 Hb_003073_050 Hb_003073_050 Hb_006018_070--Hb_003073_050 Hb_002151_080 Hb_002151_080 Hb_006018_070--Hb_002151_080 Hb_003061_010 Hb_003061_010 Hb_006018_070--Hb_003061_010 Hb_000032_060 Hb_000032_060 Hb_006018_070--Hb_000032_060 Hb_004787_110 Hb_004787_110 Hb_004453_010--Hb_004787_110 Hb_000261_260 Hb_000261_260 Hb_004453_010--Hb_000261_260 Hb_000270_300 Hb_000270_300 Hb_004453_010--Hb_000270_300 Hb_032202_120 Hb_032202_120 Hb_004453_010--Hb_032202_120 Hb_002346_010 Hb_002346_010 Hb_004453_010--Hb_002346_010 Hb_000844_070 Hb_000844_070 Hb_004453_010--Hb_000844_070 Hb_000030_180 Hb_000030_180 Hb_000679_050--Hb_000030_180 Hb_006694_020 Hb_006694_020 Hb_000679_050--Hb_006694_020 Hb_001329_290 Hb_001329_290 Hb_000679_050--Hb_001329_290 Hb_000265_240 Hb_000265_240 Hb_000679_050--Hb_000265_240 Hb_001234_080 Hb_001234_080 Hb_000679_050--Hb_001234_080 Hb_004449_170 Hb_004449_170 Hb_000679_050--Hb_004449_170 Hb_000723_040 Hb_000723_040 Hb_000300_080--Hb_000723_040 Hb_003942_020 Hb_003942_020 Hb_000300_080--Hb_003942_020 Hb_000075_040 Hb_000075_040 Hb_000300_080--Hb_000075_040 Hb_010812_040 Hb_010812_040 Hb_000300_080--Hb_010812_040 Hb_009659_050 Hb_009659_050 Hb_000300_080--Hb_009659_050 Hb_004055_170 Hb_004055_170 Hb_000300_080--Hb_004055_170 Hb_019253_030 Hb_019253_030 Hb_001251_080--Hb_019253_030 Hb_000574_160 Hb_000574_160 Hb_001251_080--Hb_000574_160 Hb_001019_040 Hb_001019_040 Hb_001251_080--Hb_001019_040 Hb_001246_060 Hb_001246_060 Hb_001251_080--Hb_001246_060 Hb_001287_030 Hb_001287_030 Hb_001251_080--Hb_001287_030 Hb_000979_200 Hb_000979_200 Hb_001251_080--Hb_000979_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0645548 0.0215729 0.0842295 0 0.0806725 0.0850948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.30998 0 0.0778685 0.0793954

CAGE analysis