Hb_004375_080

Information

Type transcription factor
Description TF Family: ERF
Location Contig4375: 55878-57395
Sequence    

Annotation

kegg
ID rcu:RCOM_1179490
description hypothetical protein
nr
ID XP_012082821.1
description PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
swissprot
ID P42736
description Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2
trembl
ID A0A067K8U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf071-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42524: 55959-57384
cDNA
(Sanger)
(ID:Location)		 022_E15.ab1: 56008-56173 , 041_I18.ab1: 55959-56811 , 046_N11.ab1: 55980-56788

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_080 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
2 Hb_001195_040 0.1287935616 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
3 Hb_004109_040 0.1297013545 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
4 Hb_002234_100 0.1310841803 - - F-box family protein, putative isoform 1 [Theobroma cacao]
5 Hb_000853_430 0.1374115542 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
6 Hb_000856_380 0.1400560532 - - ubiquitin-conjugating enzyme [Medicago truncatula]
7 Hb_003621_020 0.1402269301 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
8 Hb_000661_140 0.1426395349 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
9 Hb_000130_380 0.1430813851 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
10 Hb_180424_010 0.1446446994 - - Charged multivesicular body protein, putative [Ricinus communis]
11 Hb_000866_280 0.1476763424 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
12 Hb_000836_430 0.1488068228 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
13 Hb_000010_240 0.1496923215 - - Protein bem46, putative [Ricinus communis]
14 Hb_000407_040 0.1511553931 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
15 Hb_004324_300 0.1548924086 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
16 Hb_010560_020 0.1554876628 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
17 Hb_000951_100 0.1556413605 - - PREDICTED: uncharacterized protein LOC103436565 isoform X1 [Malus domestica]
18 Hb_140833_010 0.1556913795 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
19 Hb_004800_250 0.157396821 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
20 Hb_000139_350 0.1580929706 - - AtGCP3 interacting protein 1 [Theobroma cacao]

Gene co-expression network

sample Hb_004375_080 Hb_004375_080 Hb_001195_040 Hb_001195_040 Hb_004375_080--Hb_001195_040 Hb_004109_040 Hb_004109_040 Hb_004375_080--Hb_004109_040 Hb_002234_100 Hb_002234_100 Hb_004375_080--Hb_002234_100 Hb_000853_430 Hb_000853_430 Hb_004375_080--Hb_000853_430 Hb_000856_380 Hb_000856_380 Hb_004375_080--Hb_000856_380 Hb_003621_020 Hb_003621_020 Hb_004375_080--Hb_003621_020 Hb_000661_140 Hb_000661_140 Hb_001195_040--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_001195_040--Hb_002639_150 Hb_001195_040--Hb_000853_430 Hb_000926_310 Hb_000926_310 Hb_001195_040--Hb_000926_310 Hb_001934_030 Hb_001934_030 Hb_001195_040--Hb_001934_030 Hb_000003_600 Hb_000003_600 Hb_001195_040--Hb_000003_600 Hb_002411_030 Hb_002411_030 Hb_004109_040--Hb_002411_030 Hb_000983_090 Hb_000983_090 Hb_004109_040--Hb_000983_090 Hb_000856_190 Hb_000856_190 Hb_004109_040--Hb_000856_190 Hb_007813_040 Hb_007813_040 Hb_004109_040--Hb_007813_040 Hb_029799_010 Hb_029799_010 Hb_004109_040--Hb_029799_010 Hb_000010_400 Hb_000010_400 Hb_004109_040--Hb_000010_400 Hb_002234_100--Hb_000856_380 Hb_012389_020 Hb_012389_020 Hb_002234_100--Hb_012389_020 Hb_004586_140 Hb_004586_140 Hb_002234_100--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_002234_100--Hb_003125_200 Hb_003747_220 Hb_003747_220 Hb_002234_100--Hb_003747_220 Hb_010560_020 Hb_010560_020 Hb_002234_100--Hb_010560_020 Hb_001305_010 Hb_001305_010 Hb_000853_430--Hb_001305_010 Hb_004678_040 Hb_004678_040 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_000853_430--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_000853_430--Hb_000302_270 Hb_001437_150 Hb_001437_150 Hb_000856_380--Hb_001437_150 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_000856_380--Hb_010560_020 Hb_153553_030 Hb_153553_030 Hb_003621_020--Hb_153553_030 Hb_000009_530 Hb_000009_530 Hb_003621_020--Hb_000009_530 Hb_001898_240 Hb_001898_240 Hb_003621_020--Hb_001898_240 Hb_000638_290 Hb_000638_290 Hb_003621_020--Hb_000638_290 Hb_012016_010 Hb_012016_010 Hb_003621_020--Hb_012016_010 Hb_003621_020--Hb_180424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.554 102.507 162.272 43.4737 83.439 84.5444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.2452 132.875 121.558 16.3413 11.0007

CAGE analysis