Hb_004375_100

Information

Type -
Description -
Location Contig4375: 78800-81721
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05500g
description hypothetical protein
nr
ID XP_012082823.1
description PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
swissprot
ID Q9LUQ6
description 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1
trembl
ID A0A067JW78
description Ribosomal protein L19 OS=Jatropha curcas GN=JCGZ_13972 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l19-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42525: 78761-81175
cDNA
(Sanger)
(ID:Location)		 011_B07.ab1: 78761-81016 , 018_F22.ab1: 78761-81022 , 026_E13.ab1: 78781-80793 , 026_P17.ab1: 78761-80905 , 036_N17.ab1: 78761-80959 , 043_H13.ab1: 78761-80601 , 044_L06.ab1: 78761-80601

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_100 0.0 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
2 Hb_010068_020 0.0536011532 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
3 Hb_002701_240 0.0616508855 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
4 Hb_002713_070 0.0616995978 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
5 Hb_001814_050 0.0667578059 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_156947_010 0.0722741075 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
7 Hb_001505_020 0.0727084925 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
8 Hb_006816_530 0.0757657115 - - 60S ribosomal protein L18, putative [Ricinus communis]
9 Hb_000270_370 0.0759514105 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
10 Hb_000384_100 0.075961747 - - hydrolase, putative [Ricinus communis]
11 Hb_002043_130 0.0759830173 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
12 Hb_000136_170 0.0764124047 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
13 Hb_000373_120 0.0772329215 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
14 Hb_011150_010 0.0777127898 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
15 Hb_033834_040 0.0780163307 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001279_360 0.0792505435 - - protein with unknown function [Ricinus communis]
17 Hb_089839_020 0.079831601 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
18 Hb_003734_140 0.0812065844 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000227_230 0.081314776 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
20 Hb_027073_040 0.0817718258 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004375_100 Hb_004375_100 Hb_010068_020 Hb_010068_020 Hb_004375_100--Hb_010068_020 Hb_002701_240 Hb_002701_240 Hb_004375_100--Hb_002701_240 Hb_002713_070 Hb_002713_070 Hb_004375_100--Hb_002713_070 Hb_001814_050 Hb_001814_050 Hb_004375_100--Hb_001814_050 Hb_156947_010 Hb_156947_010 Hb_004375_100--Hb_156947_010 Hb_001505_020 Hb_001505_020 Hb_004375_100--Hb_001505_020 Hb_002056_050 Hb_002056_050 Hb_010068_020--Hb_002056_050 Hb_000384_100 Hb_000384_100 Hb_010068_020--Hb_000384_100 Hb_002043_130 Hb_002043_130 Hb_010068_020--Hb_002043_130 Hb_004216_050 Hb_004216_050 Hb_010068_020--Hb_004216_050 Hb_004157_030 Hb_004157_030 Hb_010068_020--Hb_004157_030 Hb_002701_240--Hb_156947_010 Hb_011150_010 Hb_011150_010 Hb_002701_240--Hb_011150_010 Hb_005618_140 Hb_005618_140 Hb_002701_240--Hb_005618_140 Hb_027073_040 Hb_027073_040 Hb_002701_240--Hb_027073_040 Hb_002701_240--Hb_010068_020 Hb_000136_170 Hb_000136_170 Hb_002713_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_002713_070--Hb_002660_030 Hb_002713_070--Hb_001505_020 Hb_089839_020 Hb_089839_020 Hb_002713_070--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_002713_070--Hb_002925_030 Hb_006816_530 Hb_006816_530 Hb_001814_050--Hb_006816_530 Hb_001814_050--Hb_004157_030 Hb_009793_010 Hb_009793_010 Hb_001814_050--Hb_009793_010 Hb_001814_050--Hb_002043_130 Hb_001814_050--Hb_001505_020 Hb_009686_030 Hb_009686_030 Hb_156947_010--Hb_009686_030 Hb_001279_360 Hb_001279_360 Hb_156947_010--Hb_001279_360 Hb_156947_010--Hb_010068_020 Hb_008878_030 Hb_008878_030 Hb_156947_010--Hb_008878_030 Hb_001505_020--Hb_006816_530 Hb_001505_020--Hb_000136_170 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
271.613 96.0719 103.926 190.68 242.347 315.224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
394.172 762.951 308.364 295.354 153.718

CAGE analysis