Hb_004392_030

Information

Type -
Description -
Location Contig4392: 31592-33315
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23790g
description POPTRDRAFT_822609; oxidoreductase family protein
nr
ID XP_002316410.2
description oxidoreductase family protein [Populus trichocarpa]
swissprot
ID D4N501
description Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1
trembl
ID B9HUW4
description Oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0010s23790g PE=3 SV=2
Gene Ontology
ID GO:0005506
description probable 2-oxoglutarate fe -dependent dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004392_030 0.0 - - oxidoreductase family protein [Populus trichocarpa]
2 Hb_012539_080 0.0430286715 - - Polyprotein, putative [Solanum demissum]
3 Hb_006147_020 0.0562804142 - - conserved hypothetical protein [Ricinus communis]
4 Hb_043935_010 0.0707749534 - - Receptor protein kinase-like protein [Medicago truncatula]
5 Hb_002835_050 0.1030372842 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
6 Hb_010381_080 0.1037057516 - - cytochrome P450, putative [Ricinus communis]
7 Hb_015817_010 0.1056655114 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
8 Hb_004242_200 0.1153095856 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
9 Hb_000907_130 0.1157009621 - - -
10 Hb_001300_240 0.119751812 - - shikimate dehydrogenase, putative [Ricinus communis]
11 Hb_027654_010 0.1268595891 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
12 Hb_114893_010 0.1269225741 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
13 Hb_002659_050 0.1278468584 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
14 Hb_080791_010 0.1300251328 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
15 Hb_113379_010 0.1366713594 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
16 Hb_176680_010 0.138187625 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
17 Hb_005155_030 0.1385636668 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_006053_020 0.1392048893 - - CAP [Theobroma cacao]
19 Hb_039435_020 0.1395383085 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
20 Hb_000026_060 0.1455055618 - - beta-1,3-glucanase [Manihot esculenta]

Gene co-expression network

sample Hb_004392_030 Hb_004392_030 Hb_012539_080 Hb_012539_080 Hb_004392_030--Hb_012539_080 Hb_006147_020 Hb_006147_020 Hb_004392_030--Hb_006147_020 Hb_043935_010 Hb_043935_010 Hb_004392_030--Hb_043935_010 Hb_002835_050 Hb_002835_050 Hb_004392_030--Hb_002835_050 Hb_010381_080 Hb_010381_080 Hb_004392_030--Hb_010381_080 Hb_015817_010 Hb_015817_010 Hb_004392_030--Hb_015817_010 Hb_012539_080--Hb_043935_010 Hb_012539_080--Hb_006147_020 Hb_012539_080--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_012539_080--Hb_000907_130 Hb_113379_010 Hb_113379_010 Hb_012539_080--Hb_113379_010 Hb_006147_020--Hb_043935_010 Hb_006147_020--Hb_015817_010 Hb_006147_020--Hb_010381_080 Hb_080791_010 Hb_080791_010 Hb_006147_020--Hb_080791_010 Hb_043935_010--Hb_015817_010 Hb_043935_010--Hb_010381_080 Hb_002659_050 Hb_002659_050 Hb_043935_010--Hb_002659_050 Hb_002835_050--Hb_000907_130 Hb_005155_030 Hb_005155_030 Hb_002835_050--Hb_005155_030 Hb_003030_050 Hb_003030_050 Hb_002835_050--Hb_003030_050 Hb_097783_030 Hb_097783_030 Hb_002835_050--Hb_097783_030 Hb_004242_200 Hb_004242_200 Hb_010381_080--Hb_004242_200 Hb_114893_010 Hb_114893_010 Hb_010381_080--Hb_114893_010 Hb_001300_240 Hb_001300_240 Hb_010381_080--Hb_001300_240 Hb_004459_050 Hb_004459_050 Hb_010381_080--Hb_004459_050 Hb_015817_010--Hb_080791_010 Hb_005029_030 Hb_005029_030 Hb_015817_010--Hb_005029_030 Hb_000026_060 Hb_000026_060 Hb_015817_010--Hb_000026_060 Hb_015817_010--Hb_004459_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0862231 0.031523 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0408317 0.210115

CAGE analysis