Hb_004393_030

Information

Type -
Description -
Location Contig4393: 50922-52481
Sequence    

Annotation

kegg
ID pop:POPTR_0006s20030g
description POPTRDRAFT_716804; CBL-interacting protein kinase 6
nr
ID XP_002309336.2
description CBL-interacting protein kinase 6 [Populus trichocarpa]
swissprot
ID O65554
description CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1
trembl
ID B9HAS6
description Non-specific serine/threonine protein kinase OS=Populus trichocarpa GN=POPTR_0006s20030g PE=4 SV=1
Gene Ontology
ID GO:0004672
description cbl-interacting serine threonine-protein kinase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42589: 51358-51572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004393_030 0.0 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
2 Hb_008810_030 0.0587286215 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
3 Hb_021254_020 0.0696730754 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_000032_090 0.077754265 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000985_140 0.0823760768 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
6 Hb_001660_130 0.0901624155 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
7 Hb_007007_030 0.0953978563 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007102_010 0.095469667 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
9 Hb_134022_010 0.0967389989 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
10 Hb_000054_140 0.0988335818 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
11 Hb_004112_050 0.1032279241 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_004837_110 0.1035127365 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
13 Hb_012799_040 0.1061339215 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
14 Hb_003078_070 0.1075179978 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
15 Hb_004109_240 0.1087639309 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
16 Hb_001254_020 0.1092400844 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_004724_300 0.111811129 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
18 Hb_000836_420 0.1146381613 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_007254_050 0.1164736713 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
20 Hb_001247_160 0.1166962954 - - s-adenosylmethionine synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004393_030 Hb_004393_030 Hb_008810_030 Hb_008810_030 Hb_004393_030--Hb_008810_030 Hb_021254_020 Hb_021254_020 Hb_004393_030--Hb_021254_020 Hb_000032_090 Hb_000032_090 Hb_004393_030--Hb_000032_090 Hb_000985_140 Hb_000985_140 Hb_004393_030--Hb_000985_140 Hb_001660_130 Hb_001660_130 Hb_004393_030--Hb_001660_130 Hb_007007_030 Hb_007007_030 Hb_004393_030--Hb_007007_030 Hb_008810_030--Hb_021254_020 Hb_134022_010 Hb_134022_010 Hb_008810_030--Hb_134022_010 Hb_004899_360 Hb_004899_360 Hb_008810_030--Hb_004899_360 Hb_008810_030--Hb_000032_090 Hb_004109_240 Hb_004109_240 Hb_008810_030--Hb_004109_240 Hb_021254_020--Hb_004109_240 Hb_003078_070 Hb_003078_070 Hb_021254_020--Hb_003078_070 Hb_021254_020--Hb_000985_140 Hb_021254_020--Hb_001660_130 Hb_001254_020 Hb_001254_020 Hb_000032_090--Hb_001254_020 Hb_002374_030 Hb_002374_030 Hb_000032_090--Hb_002374_030 Hb_000032_090--Hb_000985_140 Hb_012799_040 Hb_012799_040 Hb_000032_090--Hb_012799_040 Hb_000985_140--Hb_003078_070 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000071_090 Hb_000071_090 Hb_000985_140--Hb_000071_090 Hb_002783_130 Hb_002783_130 Hb_001660_130--Hb_002783_130 Hb_000402_180 Hb_000402_180 Hb_001660_130--Hb_000402_180 Hb_001660_130--Hb_008810_030 Hb_001660_130--Hb_012799_040 Hb_004112_050 Hb_004112_050 Hb_007007_030--Hb_004112_050 Hb_007007_030--Hb_000032_090 Hb_007007_030--Hb_001254_020 Hb_007007_030--Hb_000985_140 Hb_004724_300 Hb_004724_300 Hb_007007_030--Hb_004724_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21151 601.059 426.183 284.207 0.356791 0.551998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19681 3.79163 0.238766 60.8694 188.745

CAGE analysis