Hb_004398_030

Information

Type -
Description -
Location Contig4398: 56168-59213
Sequence    

Annotation

kegg
ID rcu:RCOM_1052540
description signal peptidase I, putative (EC:3.4.21.89)
nr
ID XP_012076706.1
description PREDICTED: chloroplast processing peptidase [Jatropha curcas]
swissprot
ID Q8H0W1
description Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2
trembl
ID B9RKP7
description Signal peptidase I, putative OS=Ricinus communis GN=RCOM_1052540 PE=3 SV=1
Gene Ontology
ID GO:0016021
description chloroplast processing peptidase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42602: 56249-59229
cDNA
(Sanger)
(ID:Location)		 015_I21.ab1: 58487-59229 , 022_H11.ab1: 58613-59230 , 025_P07.ab1: 56331-56530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004398_030 0.0 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
2 Hb_001975_090 0.0970123687 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
3 Hb_007803_030 0.1007660779 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
4 Hb_006816_180 0.1097507983 - - -
5 Hb_000135_030 0.1116006983 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
6 Hb_000181_240 0.1123629503 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
7 Hb_000627_250 0.1140997009 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
8 Hb_001322_140 0.1145953901 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
9 Hb_002639_140 0.1166725738 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
10 Hb_001014_100 0.1189254933 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
11 Hb_000184_170 0.1190121959 - - hypothetical protein RCOM_1213430 [Ricinus communis]
12 Hb_137222_020 0.11906865 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
13 Hb_003952_060 0.1204365449 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
14 Hb_001498_010 0.120627167 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
15 Hb_025557_050 0.1210854195 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
16 Hb_001700_010 0.1218617142 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
17 Hb_000346_060 0.1227281025 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
18 Hb_000445_140 0.1233082092 - - hypothetical protein RCOM_0561550 [Ricinus communis]
19 Hb_001604_120 0.1233253431 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
20 Hb_002217_260 0.1255167092 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]

Gene co-expression network

sample Hb_004398_030 Hb_004398_030 Hb_001975_090 Hb_001975_090 Hb_004398_030--Hb_001975_090 Hb_007803_030 Hb_007803_030 Hb_004398_030--Hb_007803_030 Hb_006816_180 Hb_006816_180 Hb_004398_030--Hb_006816_180 Hb_000135_030 Hb_000135_030 Hb_004398_030--Hb_000135_030 Hb_000181_240 Hb_000181_240 Hb_004398_030--Hb_000181_240 Hb_000627_250 Hb_000627_250 Hb_004398_030--Hb_000627_250 Hb_000205_190 Hb_000205_190 Hb_001975_090--Hb_000205_190 Hb_004970_190 Hb_004970_190 Hb_001975_090--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_001975_090--Hb_000804_040 Hb_001001_080 Hb_001001_080 Hb_001975_090--Hb_001001_080 Hb_001700_010 Hb_001700_010 Hb_001975_090--Hb_001700_010 Hb_000869_020 Hb_000869_020 Hb_001975_090--Hb_000869_020 Hb_000300_670 Hb_000300_670 Hb_007803_030--Hb_000300_670 Hb_001014_100 Hb_001014_100 Hb_007803_030--Hb_001014_100 Hb_025557_050 Hb_025557_050 Hb_007803_030--Hb_025557_050 Hb_007803_030--Hb_006816_180 Hb_000640_160 Hb_000640_160 Hb_007803_030--Hb_000640_160 Hb_005496_050 Hb_005496_050 Hb_006816_180--Hb_005496_050 Hb_000062_260 Hb_000062_260 Hb_006816_180--Hb_000062_260 Hb_000358_140 Hb_000358_140 Hb_006816_180--Hb_000358_140 Hb_002027_090 Hb_002027_090 Hb_006816_180--Hb_002027_090 Hb_006816_180--Hb_025557_050 Hb_006816_180--Hb_000300_670 Hb_114310_110 Hb_114310_110 Hb_000135_030--Hb_114310_110 Hb_011486_040 Hb_011486_040 Hb_000135_030--Hb_011486_040 Hb_007811_030 Hb_007811_030 Hb_000135_030--Hb_007811_030 Hb_002496_020 Hb_002496_020 Hb_000135_030--Hb_002496_020 Hb_000984_270 Hb_000984_270 Hb_000135_030--Hb_000984_270 Hb_001279_030 Hb_001279_030 Hb_000181_240--Hb_001279_030 Hb_000346_060 Hb_000346_060 Hb_000181_240--Hb_000346_060 Hb_000184_170 Hb_000184_170 Hb_000181_240--Hb_000184_170 Hb_002374_240 Hb_002374_240 Hb_000181_240--Hb_002374_240 Hb_000224_160 Hb_000224_160 Hb_000181_240--Hb_000224_160 Hb_000679_020 Hb_000679_020 Hb_000181_240--Hb_000679_020 Hb_000948_170 Hb_000948_170 Hb_000627_250--Hb_000948_170 Hb_031284_070 Hb_031284_070 Hb_000627_250--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000627_250--Hb_021346_030 Hb_000015_100 Hb_000015_100 Hb_000627_250--Hb_000015_100 Hb_001259_020 Hb_001259_020 Hb_000627_250--Hb_001259_020 Hb_000627_250--Hb_025557_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.0926 24.0024 48.5767 24.5565 35.4429 37.522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.3948 16.9566 49.254 16.7475 73.7174

CAGE analysis