Hb_004407_030

Information

Type -
Description -
Location Contig4407: 77370-91456
Sequence    

Annotation

kegg
ID fve:101299142
description LRR receptor-like serine/threonine-protein kinase EFR-like
nr
ID XP_012091026.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
swissprot
ID Q9ZUI0
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1
trembl
ID A0A067LC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01308 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at3g47570 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004407_030 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
2 Hb_028227_050 0.1168322296 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
3 Hb_168319_040 0.1198987235 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
4 Hb_001671_130 0.1212062185 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
5 Hb_001832_180 0.1299618196 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
6 Hb_009093_020 0.1301161533 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
7 Hb_000282_100 0.1310685066 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
8 Hb_001691_170 0.1315404132 - - PREDICTED: callose synthase 12-like [Glycine max]
9 Hb_019064_010 0.134056191 - - -
10 Hb_144045_010 0.1365474387 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
11 Hb_000858_050 0.1386584096 - - kinase, putative [Ricinus communis]
12 Hb_000037_090 0.1396317483 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
13 Hb_000029_390 0.1414159259 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_000841_040 0.1433614217 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
15 Hb_007426_070 0.1441116493 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
16 Hb_001081_050 0.1445650973 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
17 Hb_001517_060 0.1462713529 - - phosphoribulose kinase, putative [Ricinus communis]
18 Hb_003362_050 0.1492613186 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
19 Hb_004146_030 0.1494677354 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_080033_020 0.1499087225 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_004407_030 Hb_004407_030 Hb_028227_050 Hb_028227_050 Hb_004407_030--Hb_028227_050 Hb_168319_040 Hb_168319_040 Hb_004407_030--Hb_168319_040 Hb_001671_130 Hb_001671_130 Hb_004407_030--Hb_001671_130 Hb_001832_180 Hb_001832_180 Hb_004407_030--Hb_001832_180 Hb_009093_020 Hb_009093_020 Hb_004407_030--Hb_009093_020 Hb_000282_100 Hb_000282_100 Hb_004407_030--Hb_000282_100 Hb_028227_050--Hb_001671_130 Hb_009663_030 Hb_009663_030 Hb_028227_050--Hb_009663_030 Hb_001287_070 Hb_001287_070 Hb_028227_050--Hb_001287_070 Hb_002995_060 Hb_002995_060 Hb_028227_050--Hb_002995_060 Hb_011068_010 Hb_011068_010 Hb_028227_050--Hb_011068_010 Hb_028227_050--Hb_001832_180 Hb_000441_080 Hb_000441_080 Hb_168319_040--Hb_000441_080 Hb_077151_010 Hb_077151_010 Hb_168319_040--Hb_077151_010 Hb_001579_050 Hb_001579_050 Hb_168319_040--Hb_001579_050 Hb_001691_170 Hb_001691_170 Hb_168319_040--Hb_001691_170 Hb_000858_050 Hb_000858_050 Hb_168319_040--Hb_000858_050 Hb_005678_030 Hb_005678_030 Hb_168319_040--Hb_005678_030 Hb_001671_130--Hb_009663_030 Hb_001671_130--Hb_002995_060 Hb_001671_130--Hb_001287_070 Hb_019064_010 Hb_019064_010 Hb_001671_130--Hb_019064_010 Hb_001671_130--Hb_001832_180 Hb_000841_040 Hb_000841_040 Hb_001832_180--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_001832_180--Hb_003090_050 Hb_000010_380 Hb_000010_380 Hb_001832_180--Hb_000010_380 Hb_001135_170 Hb_001135_170 Hb_001832_180--Hb_001135_170 Hb_001832_180--Hb_001287_070 Hb_001832_180--Hb_000282_100 Hb_009093_020--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_009093_020--Hb_011381_120 Hb_001517_060 Hb_001517_060 Hb_009093_020--Hb_001517_060 Hb_001289_050 Hb_001289_050 Hb_009093_020--Hb_001289_050 Hb_009093_020--Hb_000282_100 Hb_009093_020--Hb_003090_050 Hb_000282_100--Hb_001289_050 Hb_000029_390 Hb_000029_390 Hb_000282_100--Hb_000029_390 Hb_000282_100--Hb_000841_040 Hb_004631_020 Hb_004631_020 Hb_000282_100--Hb_004631_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0187144 0.0637909 0.00570247 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00536844 0.258822

CAGE analysis