Hb_004409_030

Information

Type -
Description -
Location Contig4409: 69765-76622
Sequence    

Annotation

kegg
ID tcc:TCM_007743
description Glutamine synthetase 1,4
nr
ID XP_007043312.1
description Glutamine synthetase 1,4 [Theobroma cacao]
swissprot
ID P32289
description Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1
trembl
ID A0A061EA48
description Glutamine synthetase OS=Theobroma cacao GN=TCM_007743 PE=3 SV=1
Gene Ontology
ID GO:0005737
description glutamine synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42614: 69654-76583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004409_030 0.0 - - Glutamine synthetase 1,4 [Theobroma cacao]
2 Hb_069659_010 0.1535144443 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000220_080 0.1572640876 - - kinase, putative [Ricinus communis]
4 Hb_003371_190 0.1604563645 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
5 Hb_014497_040 0.1604712 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
6 Hb_000000_110 0.1618285321 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
7 Hb_000000_120 0.1631923352 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
8 Hb_030565_110 0.1655233499 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
9 Hb_001832_210 0.1668470907 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
10 Hb_002072_010 0.1689961649 - - conserved hypothetical protein [Ricinus communis]
11 Hb_106136_010 0.1697138069 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_001486_060 0.1706171188 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
13 Hb_002316_170 0.172851941 - - purine permease, putative [Ricinus communis]
14 Hb_001178_080 0.1739780204 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
15 Hb_005016_020 0.1765784292 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
16 Hb_160405_010 0.1771711108 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_048643_010 0.1808047404 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_002685_030 0.1836530805 - - PREDICTED: protein SMG7L [Jatropha curcas]
19 Hb_002119_070 0.1841808368 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
20 Hb_000029_440 0.1864018774 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_004409_030 Hb_004409_030 Hb_069659_010 Hb_069659_010 Hb_004409_030--Hb_069659_010 Hb_000220_080 Hb_000220_080 Hb_004409_030--Hb_000220_080 Hb_003371_190 Hb_003371_190 Hb_004409_030--Hb_003371_190 Hb_014497_040 Hb_014497_040 Hb_004409_030--Hb_014497_040 Hb_000000_110 Hb_000000_110 Hb_004409_030--Hb_000000_110 Hb_000000_120 Hb_000000_120 Hb_004409_030--Hb_000000_120 Hb_002687_020 Hb_002687_020 Hb_069659_010--Hb_002687_020 Hb_000442_130 Hb_000442_130 Hb_069659_010--Hb_000442_130 Hb_001832_210 Hb_001832_210 Hb_069659_010--Hb_001832_210 Hb_069659_010--Hb_000000_110 Hb_001004_120 Hb_001004_120 Hb_069659_010--Hb_001004_120 Hb_000220_080--Hb_000000_120 Hb_002316_170 Hb_002316_170 Hb_000220_080--Hb_002316_170 Hb_000072_020 Hb_000072_020 Hb_000220_080--Hb_000072_020 Hb_001009_150 Hb_001009_150 Hb_000220_080--Hb_001009_150 Hb_000220_080--Hb_000000_110 Hb_006949_060 Hb_006949_060 Hb_000220_080--Hb_006949_060 Hb_030565_110 Hb_030565_110 Hb_003371_190--Hb_030565_110 Hb_000679_040 Hb_000679_040 Hb_003371_190--Hb_000679_040 Hb_002072_010 Hb_002072_010 Hb_003371_190--Hb_002072_010 Hb_010381_020 Hb_010381_020 Hb_003371_190--Hb_010381_020 Hb_009535_030 Hb_009535_030 Hb_003371_190--Hb_009535_030 Hb_000254_070 Hb_000254_070 Hb_003371_190--Hb_000254_070 Hb_005941_030 Hb_005941_030 Hb_014497_040--Hb_005941_030 Hb_000012_400 Hb_000012_400 Hb_014497_040--Hb_000012_400 Hb_003029_060 Hb_003029_060 Hb_014497_040--Hb_003029_060 Hb_010812_110 Hb_010812_110 Hb_014497_040--Hb_010812_110 Hb_000562_100 Hb_000562_100 Hb_014497_040--Hb_000562_100 Hb_004631_170 Hb_004631_170 Hb_014497_040--Hb_004631_170 Hb_005016_020 Hb_005016_020 Hb_000000_110--Hb_005016_020 Hb_000000_110--Hb_001832_210 Hb_001178_080 Hb_001178_080 Hb_000000_110--Hb_001178_080 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_003506_020 Hb_003506_020 Hb_000000_120--Hb_003506_020 Hb_005970_010 Hb_005970_010 Hb_000000_120--Hb_005970_010 Hb_000000_120--Hb_002072_010 Hb_000000_120--Hb_002316_170 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4222 125.506 72.1917 278.403 51.7465 72.4431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31618 2.99112 6.60883 164.536 97.2317

CAGE analysis