Hb_004410_030

Information

Type -
Description -
Location Contig4410: 26117-30717
Sequence    

Annotation

kegg
ID rcu:RCOM_1596560
description heat shock protein binding protein, putative
nr
ID XP_012071975.1
description PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9FIG9
description Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1
trembl
ID A0A067KQU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04516 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42660: 29456-30847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_030 0.0 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001357_250 0.049110747 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
3 Hb_000011_200 0.0511899605 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
4 Hb_003025_110 0.0553795674 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
5 Hb_000225_040 0.0578169495 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_002271_030 0.0586109708 - - Vacuolar protein sorting protein, putative [Ricinus communis]
7 Hb_004619_030 0.05916211 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
8 Hb_000617_180 0.0617881524 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
9 Hb_007575_050 0.0643839295 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
10 Hb_003525_010 0.069132305 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
11 Hb_001289_080 0.070286927 - - PREDICTED: protein YLS9-like [Jatropha curcas]
12 Hb_000347_070 0.0709001196 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003158_010 0.0713019249 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
14 Hb_003847_130 0.0723326679 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
15 Hb_000193_190 0.0723388709 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
16 Hb_063716_100 0.0728144892 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
17 Hb_007632_240 0.0728570398 - - transporter, putative [Ricinus communis]
18 Hb_004954_070 0.0728646564 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
19 Hb_033642_090 0.0731722049 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000139_290 0.0738212342 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004410_030 Hb_004410_030 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_003025_110 Hb_003025_110 Hb_004410_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_033642_090 Hb_033642_090 Hb_001357_250--Hb_033642_090 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_123915_040 Hb_123915_040 Hb_001357_250--Hb_123915_040 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_002271_030--Hb_000011_200 Hb_002271_030--Hb_003025_110 Hb_002271_030--Hb_000225_040 Hb_030736_100 Hb_030736_100 Hb_002271_030--Hb_030736_100 Hb_001493_030 Hb_001493_030 Hb_002271_030--Hb_001493_030 Hb_003163_020 Hb_003163_020 Hb_004619_030--Hb_003163_020 Hb_000347_070 Hb_000347_070 Hb_004619_030--Hb_000347_070 Hb_004619_030--Hb_000011_200 Hb_004619_030--Hb_011930_160 Hb_004619_030--Hb_000617_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9862 1.79368 1.98091 1.83311 3.21701 3.4855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82955 2.82456 2.52454 3.77235 2.25112

CAGE analysis