Hb_004410_050

Information

Type -
Description -
Location Contig4410: 44753-47146
Sequence    

Annotation

kegg
ID pop:POPTR_0005s25620g
description POPTRDRAFT_1079542; hypothetical protein
nr
ID XP_012071972.1
description PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
swissprot
ID O23052
description Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1
trembl
ID A0A067L3C1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04514 PE=4 SV=1
Gene Ontology
ID GO:0005509
description uncharacterized tpr repeat-containing protein at1g05150-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_050 0.0 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
2 Hb_000723_220 0.0815490245 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
3 Hb_000556_220 0.0852920555 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
4 Hb_001195_470 0.0884005165 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
5 Hb_000696_050 0.0892542155 - - PREDICTED: CSC1-like protein At4g35870 [Jatropha curcas]
6 Hb_140627_020 0.0899302817 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
7 Hb_000680_110 0.0903226262 - - Endosomal P24A protein precursor, putative [Ricinus communis]
8 Hb_002311_100 0.094423904 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
9 Hb_000174_290 0.0953466983 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
10 Hb_006637_020 0.0977444491 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
11 Hb_000183_050 0.1011422267 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
12 Hb_004228_010 0.1011687574 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
13 Hb_004019_120 0.1028246081 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
14 Hb_021297_050 0.1037588613 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
15 Hb_000094_310 0.1039219261 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
16 Hb_004410_120 0.1049014272 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
17 Hb_004182_050 0.1053803211 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
18 Hb_000667_030 0.1057744629 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
19 Hb_009898_010 0.1060004974 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
20 Hb_000264_350 0.1077622421 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]

Gene co-expression network

sample Hb_004410_050 Hb_004410_050 Hb_000723_220 Hb_000723_220 Hb_004410_050--Hb_000723_220 Hb_000556_220 Hb_000556_220 Hb_004410_050--Hb_000556_220 Hb_001195_470 Hb_001195_470 Hb_004410_050--Hb_001195_470 Hb_000696_050 Hb_000696_050 Hb_004410_050--Hb_000696_050 Hb_140627_020 Hb_140627_020 Hb_004410_050--Hb_140627_020 Hb_000680_110 Hb_000680_110 Hb_004410_050--Hb_000680_110 Hb_000230_260 Hb_000230_260 Hb_000723_220--Hb_000230_260 Hb_006637_020 Hb_006637_020 Hb_000723_220--Hb_006637_020 Hb_017358_040 Hb_017358_040 Hb_000723_220--Hb_017358_040 Hb_000723_220--Hb_001195_470 Hb_085781_020 Hb_085781_020 Hb_000723_220--Hb_085781_020 Hb_071130_010 Hb_071130_010 Hb_000723_220--Hb_071130_010 Hb_000037_220 Hb_000037_220 Hb_000556_220--Hb_000037_220 Hb_000556_220--Hb_085781_020 Hb_002311_100 Hb_002311_100 Hb_000556_220--Hb_002311_100 Hb_004019_120 Hb_004019_120 Hb_000556_220--Hb_004019_120 Hb_000556_220--Hb_140627_020 Hb_003060_060 Hb_003060_060 Hb_000556_220--Hb_003060_060 Hb_001195_470--Hb_004019_120 Hb_001195_470--Hb_000680_110 Hb_003417_010 Hb_003417_010 Hb_001195_470--Hb_003417_010 Hb_001821_150 Hb_001821_150 Hb_001195_470--Hb_001821_150 Hb_004531_120 Hb_004531_120 Hb_001195_470--Hb_004531_120 Hb_012395_140 Hb_012395_140 Hb_000696_050--Hb_012395_140 Hb_000094_310 Hb_000094_310 Hb_000696_050--Hb_000094_310 Hb_004182_050 Hb_004182_050 Hb_000696_050--Hb_004182_050 Hb_000696_050--Hb_000723_220 Hb_001550_060 Hb_001550_060 Hb_000696_050--Hb_001550_060 Hb_000213_010 Hb_000213_010 Hb_000696_050--Hb_000213_010 Hb_002235_200 Hb_002235_200 Hb_140627_020--Hb_002235_200 Hb_000720_130 Hb_000720_130 Hb_140627_020--Hb_000720_130 Hb_140627_020--Hb_002311_100 Hb_013358_010 Hb_013358_010 Hb_140627_020--Hb_013358_010 Hb_005656_040 Hb_005656_040 Hb_140627_020--Hb_005656_040 Hb_000680_110--Hb_004531_120 Hb_000680_110--Hb_000723_220 Hb_000264_350 Hb_000264_350 Hb_000680_110--Hb_000264_350 Hb_000680_110--Hb_000230_260 Hb_002902_080 Hb_002902_080 Hb_000680_110--Hb_002902_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0413 27.8408 9.06926 30.4021 29.606 31.2937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4093 6.60187 26.7302 20.8293 28.2544

CAGE analysis