Hb_004410_070

Information

Type -
Description -
Location Contig4410: 50782-56761
Sequence    

Annotation

kegg
ID rcu:RCOM_1596510
description hypothetical protein
nr
ID XP_012071970.1
description PREDICTED: protein LTV1 homolog [Jatropha curcas]
swissprot
ID Q6NSQ7
description Protein LTV1 homolog OS=Mus musculus GN=Ltv1 PE=2 SV=2
trembl
ID A0A067KR14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42662: 50868-56714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_070 0.0 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
2 Hb_007017_070 0.054846367 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
3 Hb_000723_110 0.0624410241 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
4 Hb_002542_130 0.0665164954 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
5 Hb_000700_060 0.0681130735 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
6 Hb_010417_070 0.069860363 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
7 Hb_000069_130 0.0722230982 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
8 Hb_007193_110 0.0724270743 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
9 Hb_000264_080 0.0739250235 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
10 Hb_002282_060 0.0746376165 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
11 Hb_010661_020 0.0749713888 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
12 Hb_000094_090 0.0750496772 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
13 Hb_000926_010 0.0753146338 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
14 Hb_004032_230 0.0759589954 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
15 Hb_000809_160 0.0761442305 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
16 Hb_005542_050 0.0763820472 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
17 Hb_005389_160 0.0767141535 - - PREDICTED: casein kinase I [Jatropha curcas]
18 Hb_006738_050 0.0768865545 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
19 Hb_001534_210 0.0773921633 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
20 Hb_000556_170 0.0779980352 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004410_070 Hb_004410_070 Hb_007017_070 Hb_007017_070 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_000227_310 Hb_000227_310 Hb_007017_070--Hb_000227_310 Hb_007017_070--Hb_000723_110 Hb_030545_030 Hb_030545_030 Hb_007017_070--Hb_030545_030 Hb_102438_030 Hb_102438_030 Hb_007017_070--Hb_102438_030 Hb_002903_140 Hb_002903_140 Hb_007017_070--Hb_002903_140 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000809_160 Hb_000809_160 Hb_000723_110--Hb_000809_160 Hb_000094_090 Hb_000094_090 Hb_000723_110--Hb_000094_090 Hb_000373_230 Hb_000373_230 Hb_000723_110--Hb_000373_230 Hb_001231_090 Hb_001231_090 Hb_002542_130--Hb_001231_090 Hb_001545_150 Hb_001545_150 Hb_002542_130--Hb_001545_150 Hb_001277_300 Hb_001277_300 Hb_002542_130--Hb_001277_300 Hb_005188_040 Hb_005188_040 Hb_002542_130--Hb_005188_040 Hb_002282_060 Hb_002282_060 Hb_002542_130--Hb_002282_060 Hb_002119_090 Hb_002119_090 Hb_000700_060--Hb_002119_090 Hb_004785_030 Hb_004785_030 Hb_000700_060--Hb_004785_030 Hb_006738_050 Hb_006738_050 Hb_000700_060--Hb_006738_050 Hb_002284_170 Hb_002284_170 Hb_000700_060--Hb_002284_170 Hb_000059_020 Hb_000059_020 Hb_000700_060--Hb_000059_020 Hb_005389_160 Hb_005389_160 Hb_010417_070--Hb_005389_160 Hb_060094_020 Hb_060094_020 Hb_010417_070--Hb_060094_020 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030 Hb_003912_040 Hb_003912_040 Hb_000069_130--Hb_003912_040 Hb_000402_230 Hb_000402_230 Hb_000069_130--Hb_000402_230 Hb_000069_130--Hb_000809_160 Hb_001089_050 Hb_001089_050 Hb_000069_130--Hb_001089_050 Hb_002374_290 Hb_002374_290 Hb_000069_130--Hb_002374_290 Hb_000069_130--Hb_002542_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6504 45.881 23.4138 16.8474 21.5992 20.7297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.86874 12.3616 12.9383 18.2011 13.1198

CAGE analysis