Hb_004410_100

Information

Type transcription factor
Description TF Family: Orphans
Location Contig4410: 93300-94988
Sequence    

Annotation

kegg
ID rcu:RCOM_1596360
description Salt-tolerance protein, putative
nr
ID XP_012071969.1
description PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
swissprot
ID Q9LQZ7
description B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1
trembl
ID A0A067L270
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04510 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42668: 93281-94988 , PASA_asmbl_42669: 93281-94821
cDNA
(Sanger)
(ID:Location)		 028_E19.ab1: 94023-94818 , 034_A20.ab1: 93942-94818 , 039_C16.ab1: 94056-94818

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_100 0.0 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
2 Hb_000236_140 0.0991798831 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
3 Hb_004128_180 0.1063615496 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_119600_040 0.1156250038 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
5 Hb_004414_050 0.1162961059 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_006647_020 0.1164357807 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
7 Hb_003551_050 0.1170124164 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
8 Hb_006816_450 0.118421236 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000327_220 0.1185976166 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
10 Hb_005686_030 0.1204005482 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
11 Hb_003687_100 0.1209522182 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
12 Hb_001959_160 0.1248558164 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
13 Hb_003687_240 0.1250903698 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
14 Hb_000635_220 0.1257009432 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
15 Hb_000935_050 0.1278180672 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
16 Hb_002006_090 0.1279432777 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
17 Hb_007075_050 0.1291591933 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000019_060 0.1292092731 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
19 Hb_027472_170 0.1292636605 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
20 Hb_005188_090 0.12994894 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_004410_100 Hb_004410_100 Hb_000236_140 Hb_000236_140 Hb_004410_100--Hb_000236_140 Hb_004128_180 Hb_004128_180 Hb_004410_100--Hb_004128_180 Hb_119600_040 Hb_119600_040 Hb_004410_100--Hb_119600_040 Hb_004414_050 Hb_004414_050 Hb_004410_100--Hb_004414_050 Hb_006647_020 Hb_006647_020 Hb_004410_100--Hb_006647_020 Hb_003551_050 Hb_003551_050 Hb_004410_100--Hb_003551_050 Hb_003687_100 Hb_003687_100 Hb_000236_140--Hb_003687_100 Hb_000236_140--Hb_004128_180 Hb_007416_270 Hb_007416_270 Hb_000236_140--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_000997_400 Hb_000997_400 Hb_004128_180--Hb_000997_400 Hb_000019_060 Hb_000019_060 Hb_004128_180--Hb_000019_060 Hb_000059_220 Hb_000059_220 Hb_004128_180--Hb_000059_220 Hb_027472_170 Hb_027472_170 Hb_004128_180--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_004128_180--Hb_000297_200 Hb_000935_050 Hb_000935_050 Hb_119600_040--Hb_000935_050 Hb_119600_040--Hb_007075_050 Hb_005686_030 Hb_005686_030 Hb_119600_040--Hb_005686_030 Hb_119600_040--Hb_027472_170 Hb_119600_040--Hb_000236_140 Hb_119600_040--Hb_000297_200 Hb_007429_030 Hb_007429_030 Hb_004414_050--Hb_007429_030 Hb_000125_030 Hb_000125_030 Hb_004414_050--Hb_000125_030 Hb_004414_050--Hb_000019_060 Hb_004414_050--Hb_004128_180 Hb_001159_080 Hb_001159_080 Hb_004414_050--Hb_001159_080 Hb_003787_020 Hb_003787_020 Hb_006647_020--Hb_003787_020 Hb_002006_090 Hb_002006_090 Hb_006647_020--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_006647_020--Hb_000111_360 Hb_002056_060 Hb_002056_060 Hb_006647_020--Hb_002056_060 Hb_000116_010 Hb_000116_010 Hb_006647_020--Hb_000116_010 Hb_000406_120 Hb_000406_120 Hb_006647_020--Hb_000406_120 Hb_093458_050 Hb_093458_050 Hb_003551_050--Hb_093458_050 Hb_011953_020 Hb_011953_020 Hb_003551_050--Hb_011953_020 Hb_000976_360 Hb_000976_360 Hb_003551_050--Hb_000976_360 Hb_031862_110 Hb_031862_110 Hb_003551_050--Hb_031862_110 Hb_002603_160 Hb_002603_160 Hb_003551_050--Hb_002603_160 Hb_000753_130 Hb_000753_130 Hb_003551_050--Hb_000753_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9877 9.2132 3.8172 6.93251 10.0037 13.245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0866 19.0683 51.7044 15.2548 3.38346

CAGE analysis