Hb_004413_030

Information

Type -
Description -
Location Contig4413: 14668-24149
Sequence    

Annotation

kegg
ID tcc:TCM_033222
description Retrotransposon protein, putative
nr
ID XP_007022530.1
description Retrotransposon protein, putative [Theobroma cacao]
swissprot
ID A4FUB7
description Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1
trembl
ID A0A061F9L8
description Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_033222 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004413_030 0.0 - - Retrotransposon protein, putative [Theobroma cacao]
2 Hb_135624_010 0.1350343254 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
3 Hb_062244_010 0.1731907223 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_005532_010 0.2046205423 - - -
5 Hb_001009_130 0.207504464 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
6 Hb_003446_040 0.2102758685 - - -
7 Hb_001277_310 0.2209399601 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
8 Hb_010142_080 0.2234720069 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
9 Hb_006344_010 0.2331842246 - - -
10 Hb_021616_010 0.2377045077 - - -
11 Hb_009421_010 0.2618454621 - - -
12 Hb_025457_010 0.2782944786 - - -
13 Hb_000144_140 0.2787716313 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
14 Hb_013429_020 0.283871038 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
15 Hb_002028_100 0.2897840764 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
16 Hb_123521_010 0.2906413988 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_174876_010 0.3075850296 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_186982_010 0.3150127858 - - PREDICTED: uncharacterized protein LOC104120222 [Nicotiana tomentosiformis]
19 Hb_001534_170 0.3245343417 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
20 Hb_008147_010 0.3264776456 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_004413_030 Hb_004413_030 Hb_135624_010 Hb_135624_010 Hb_004413_030--Hb_135624_010 Hb_062244_010 Hb_062244_010 Hb_004413_030--Hb_062244_010 Hb_005532_010 Hb_005532_010 Hb_004413_030--Hb_005532_010 Hb_001009_130 Hb_001009_130 Hb_004413_030--Hb_001009_130 Hb_003446_040 Hb_003446_040 Hb_004413_030--Hb_003446_040 Hb_001277_310 Hb_001277_310 Hb_004413_030--Hb_001277_310 Hb_135624_010--Hb_062244_010 Hb_135624_010--Hb_001009_130 Hb_135624_010--Hb_005532_010 Hb_000144_140 Hb_000144_140 Hb_135624_010--Hb_000144_140 Hb_006344_010 Hb_006344_010 Hb_135624_010--Hb_006344_010 Hb_062244_010--Hb_005532_010 Hb_062244_010--Hb_001009_130 Hb_010142_080 Hb_010142_080 Hb_062244_010--Hb_010142_080 Hb_021616_010 Hb_021616_010 Hb_062244_010--Hb_021616_010 Hb_005532_010--Hb_010142_080 Hb_005532_010--Hb_021616_010 Hb_009421_010 Hb_009421_010 Hb_005532_010--Hb_009421_010 Hb_005483_010 Hb_005483_010 Hb_005532_010--Hb_005483_010 Hb_001009_130--Hb_000144_140 Hb_001009_130--Hb_001277_310 Hb_001009_130--Hb_003446_040 Hb_003446_040--Hb_001277_310 Hb_003446_040--Hb_005532_010 Hb_003446_040--Hb_135624_010 Hb_123521_010 Hb_123521_010 Hb_003446_040--Hb_123521_010 Hb_001277_310--Hb_000144_140 Hb_001277_310--Hb_006344_010 Hb_001277_310--Hb_135624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00959189 0 0 0 0 0.0259777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0650937 0.0204617 0

CAGE analysis