Hb_004414_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig4414: 56732-57316
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10430g
description POPTRDRAFT_574198; AP2 domain-containing transcription factor family protein
nr
ID XP_002325520.2
description AP2 domain-containing transcription factor family protein [Populus trichocarpa]
swissprot
ID Q9C9I2
description Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1
trembl
ID B9IQB7
description AP2 domain-containing transcription factor family protein OS=Populus trichocarpa GN=POPTR_0019s10430g PE=4 SV=2
Gene Ontology
ID GO:0005634
description ap2 domain-containing transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42685: 57016-57380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004414_040 0.0 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
2 Hb_002784_140 0.1275276346 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_001277_080 0.1622583569 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
4 Hb_005772_010 0.1951196699 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
5 Hb_000340_440 0.1958400853 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
6 Hb_006132_050 0.2074996078 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
7 Hb_004968_070 0.2127638953 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001102_100 0.2153491438 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
9 Hb_000563_310 0.2171816554 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
10 Hb_000316_100 0.236814567 - - protein with unknown function [Ricinus communis]
11 Hb_000270_730 0.2419960316 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
12 Hb_000853_360 0.2495915982 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
13 Hb_002784_150 0.252282137 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
14 Hb_058143_010 0.2526538345 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
15 Hb_003579_020 0.2552063284 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
16 Hb_183612_080 0.2558448247 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
17 Hb_000103_060 0.2564275272 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
18 Hb_001842_080 0.2582857274 - - -
19 Hb_000175_130 0.2601458123 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
20 Hb_000398_030 0.262346151 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004414_040 Hb_004414_040 Hb_002784_140 Hb_002784_140 Hb_004414_040--Hb_002784_140 Hb_001277_080 Hb_001277_080 Hb_004414_040--Hb_001277_080 Hb_005772_010 Hb_005772_010 Hb_004414_040--Hb_005772_010 Hb_000340_440 Hb_000340_440 Hb_004414_040--Hb_000340_440 Hb_006132_050 Hb_006132_050 Hb_004414_040--Hb_006132_050 Hb_004968_070 Hb_004968_070 Hb_004414_040--Hb_004968_070 Hb_002784_140--Hb_000340_440 Hb_000563_310 Hb_000563_310 Hb_002784_140--Hb_000563_310 Hb_002784_140--Hb_006132_050 Hb_002784_140--Hb_001277_080 Hb_000316_100 Hb_000316_100 Hb_002784_140--Hb_000316_100 Hb_001277_080--Hb_004968_070 Hb_001102_100 Hb_001102_100 Hb_001277_080--Hb_001102_100 Hb_000270_730 Hb_000270_730 Hb_001277_080--Hb_000270_730 Hb_002784_150 Hb_002784_150 Hb_001277_080--Hb_002784_150 Hb_005772_010--Hb_000563_310 Hb_005772_010--Hb_002784_140 Hb_005772_010--Hb_001102_100 Hb_002908_070 Hb_002908_070 Hb_005772_010--Hb_002908_070 Hb_005772_010--Hb_000340_440 Hb_000340_440--Hb_000316_100 Hb_000094_110 Hb_000094_110 Hb_000340_440--Hb_000094_110 Hb_000175_130 Hb_000175_130 Hb_000340_440--Hb_000175_130 Hb_000340_440--Hb_006132_050 Hb_148850_010 Hb_148850_010 Hb_000340_440--Hb_148850_010 Hb_000853_360 Hb_000853_360 Hb_006132_050--Hb_000853_360 Hb_000106_090 Hb_000106_090 Hb_006132_050--Hb_000106_090 Hb_002326_180 Hb_002326_180 Hb_006132_050--Hb_002326_180 Hb_000617_050 Hb_000617_050 Hb_006132_050--Hb_000617_050 Hb_000777_060 Hb_000777_060 Hb_006132_050--Hb_000777_060 Hb_001616_020 Hb_001616_020 Hb_006132_050--Hb_001616_020 Hb_004968_070--Hb_002784_150 Hb_010589_050 Hb_010589_050 Hb_004968_070--Hb_010589_050 Hb_058143_010 Hb_058143_010 Hb_004968_070--Hb_058143_010 Hb_032202_250 Hb_032202_250 Hb_004968_070--Hb_032202_250 Hb_001842_080 Hb_001842_080 Hb_004968_070--Hb_001842_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.64752 1.67549 0 0.195369 2.04402 1.66696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.98529 34.7808 2.15397 0.778603 0

CAGE analysis