Hb_004414_060

Information

Type -
Description -
Location Contig4414: 72706-84141
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10170g
description POPTRDRAFT_574176; hydrolase family protein
nr
ID KDP45618.1
description hypothetical protein JCGZ_17225 [Jatropha curcas]
swissprot
ID Q58DN4
description Protein phosphatase methylesterase 1 OS=Bos taurus GN=PPME1 PE=2 SV=3
trembl
ID A0A067LEF0
description Protein phosphatase methylesterase 1 OS=Jatropha curcas GN=JCGZ_17225 PE=3 SV=1
Gene Ontology
ID GO:0005773
description protein phosphatase methylesterase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42687: 72730-84100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004414_060 0.0 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
2 Hb_001632_040 0.0579827299 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
3 Hb_002835_040 0.0639837049 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
4 Hb_003964_070 0.0654990917 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
5 Hb_003163_020 0.0683937176 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
6 Hb_001493_030 0.0699912738 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
7 Hb_007317_110 0.07017828 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
8 Hb_000011_200 0.0727899721 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
9 Hb_000345_240 0.0731456086 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
10 Hb_002276_170 0.0756993636 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
11 Hb_011671_240 0.0760348595 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
12 Hb_004410_030 0.0760462485 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004619_030 0.0763143422 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
14 Hb_000317_470 0.0768235404 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
15 Hb_000120_670 0.0772556902 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
16 Hb_011930_160 0.0788597528 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
17 Hb_005269_070 0.0788999256 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
18 Hb_003665_060 0.0790131476 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
19 Hb_003417_020 0.0812097137 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
20 Hb_006827_020 0.0815098155 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004414_060 Hb_004414_060 Hb_001632_040 Hb_001632_040 Hb_004414_060--Hb_001632_040 Hb_002835_040 Hb_002835_040 Hb_004414_060--Hb_002835_040 Hb_003964_070 Hb_003964_070 Hb_004414_060--Hb_003964_070 Hb_003163_020 Hb_003163_020 Hb_004414_060--Hb_003163_020 Hb_001493_030 Hb_001493_030 Hb_004414_060--Hb_001493_030 Hb_007317_110 Hb_007317_110 Hb_004414_060--Hb_007317_110 Hb_002276_170 Hb_002276_170 Hb_001632_040--Hb_002276_170 Hb_114310_090 Hb_114310_090 Hb_001632_040--Hb_114310_090 Hb_001243_040 Hb_001243_040 Hb_001632_040--Hb_001243_040 Hb_004907_080 Hb_004907_080 Hb_001632_040--Hb_004907_080 Hb_000342_130 Hb_000342_130 Hb_001632_040--Hb_000342_130 Hb_005269_070 Hb_005269_070 Hb_002835_040--Hb_005269_070 Hb_004410_030 Hb_004410_030 Hb_002835_040--Hb_004410_030 Hb_004619_030 Hb_004619_030 Hb_002835_040--Hb_004619_030 Hb_000915_260 Hb_000915_260 Hb_002835_040--Hb_000915_260 Hb_002271_030 Hb_002271_030 Hb_002835_040--Hb_002271_030 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_003964_070--Hb_007317_110 Hb_000120_670 Hb_000120_670 Hb_003964_070--Hb_000120_670 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_011930_160 Hb_011930_160 Hb_003163_020--Hb_011930_160 Hb_003163_020--Hb_004619_030 Hb_000347_070 Hb_000347_070 Hb_003163_020--Hb_000347_070 Hb_000617_180 Hb_000617_180 Hb_003163_020--Hb_000617_180 Hb_000317_470 Hb_000317_470 Hb_003163_020--Hb_000317_470 Hb_000011_200 Hb_000011_200 Hb_003163_020--Hb_000011_200 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030 Hb_007317_110--Hb_006827_020 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_007317_110--Hb_003665_060 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2874 10.9299 20.3139 19.7747 34.049 28.4817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6509 24.1368 26.797 25.3493 16.1845

CAGE analysis