Hb_004421_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4421: 22647-40590
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42725: 22575-23384 , PASA_asmbl_42726: 23443-23577 , PASA_asmbl_42727: 23764-40409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004421_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_000398_140 0.0821849028 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
3 Hb_001776_100 0.0845224538 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
4 Hb_001956_080 0.0920592859 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
5 Hb_000613_250 0.092774387 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
6 Hb_012743_020 0.1049731807 - - serine/threonine protein phosphatase, putative [Ricinus communis]
7 Hb_000472_020 0.1089835969 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
8 Hb_000477_110 0.110152218 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
9 Hb_006934_020 0.1144705647 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
10 Hb_007479_080 0.115166097 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
11 Hb_001544_070 0.1159575222 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
12 Hb_000210_040 0.1175665043 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
13 Hb_000342_020 0.1176606308 - - bel1 homeotic protein, putative [Ricinus communis]
14 Hb_000589_240 0.121021666 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_000003_020 0.1250394886 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
16 Hb_005488_030 0.1258352028 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
17 Hb_000024_130 0.1278000296 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003411_020 0.1281432902 - - alpha-glucosidase, putative [Ricinus communis]
19 Hb_003025_150 0.1294324467 - - conserved hypothetical protein [Ricinus communis]
20 Hb_174101_010 0.1298351806 - - PREDICTED: receptor-like protein 12 [Populus euphratica]

Gene co-expression network

sample Hb_004421_010 Hb_004421_010 Hb_000398_140 Hb_000398_140 Hb_004421_010--Hb_000398_140 Hb_001776_100 Hb_001776_100 Hb_004421_010--Hb_001776_100 Hb_001956_080 Hb_001956_080 Hb_004421_010--Hb_001956_080 Hb_000613_250 Hb_000613_250 Hb_004421_010--Hb_000613_250 Hb_012743_020 Hb_012743_020 Hb_004421_010--Hb_012743_020 Hb_000472_020 Hb_000472_020 Hb_004421_010--Hb_000472_020 Hb_059000_010 Hb_059000_010 Hb_000398_140--Hb_059000_010 Hb_001141_160 Hb_001141_160 Hb_000398_140--Hb_001141_160 Hb_001189_100 Hb_001189_100 Hb_000398_140--Hb_001189_100 Hb_004122_060 Hb_004122_060 Hb_000398_140--Hb_004122_060 Hb_000398_140--Hb_012743_020 Hb_006528_020 Hb_006528_020 Hb_001776_100--Hb_006528_020 Hb_006634_090 Hb_006634_090 Hb_001776_100--Hb_006634_090 Hb_002450_180 Hb_002450_180 Hb_001776_100--Hb_002450_180 Hb_000411_050 Hb_000411_050 Hb_001776_100--Hb_000411_050 Hb_002078_250 Hb_002078_250 Hb_001776_100--Hb_002078_250 Hb_005488_030 Hb_005488_030 Hb_001956_080--Hb_005488_030 Hb_000477_110 Hb_000477_110 Hb_001956_080--Hb_000477_110 Hb_001153_090 Hb_001153_090 Hb_001956_080--Hb_001153_090 Hb_023344_130 Hb_023344_130 Hb_001956_080--Hb_023344_130 Hb_007747_100 Hb_007747_100 Hb_001956_080--Hb_007747_100 Hb_000342_020 Hb_000342_020 Hb_000613_250--Hb_000342_020 Hb_000613_250--Hb_000472_020 Hb_000613_250--Hb_000477_110 Hb_001013_050 Hb_001013_050 Hb_000613_250--Hb_001013_050 Hb_144703_010 Hb_144703_010 Hb_000613_250--Hb_144703_010 Hb_005357_020 Hb_005357_020 Hb_012743_020--Hb_005357_020 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_000589_240 Hb_000589_240 Hb_012743_020--Hb_000589_240 Hb_001143_140 Hb_001143_140 Hb_012743_020--Hb_001143_140 Hb_029260_010 Hb_029260_010 Hb_012743_020--Hb_029260_010 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130 Hb_001544_070 Hb_001544_070 Hb_000472_020--Hb_001544_070 Hb_001174_030 Hb_001174_030 Hb_000472_020--Hb_001174_030 Hb_000472_020--Hb_144703_010 Hb_174101_010 Hb_174101_010 Hb_000472_020--Hb_174101_010 Hb_000472_020--Hb_000342_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0773607 6.23906 4.66437 7.42969 0.0337102 0.0635588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173197 0.318032 0.104629 5.06873 4.61098

CAGE analysis