Hb_004421_020

Information

Type -
Description -
Location Contig4421: 48537-50369
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004421_020 0.0 - - -
2 Hb_009659_010 0.1247633059 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
3 Hb_023732_060 0.1504113769 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
4 Hb_000656_340 0.1581627544 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
5 Hb_000275_130 0.1642208126 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
6 Hb_021924_010 0.1660299206 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
7 Hb_006541_020 0.1694416014 - - unknown [Lotus japonicus]
8 Hb_009659_020 0.1744132145 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
9 Hb_140543_010 0.1754119018 - - -
10 Hb_000025_240 0.1756737079 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
11 Hb_003777_210 0.1811452261 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
12 Hb_000599_280 0.1826476292 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
13 Hb_020035_020 0.1859770575 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
14 Hb_001769_100 0.1896369125 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
15 Hb_000419_130 0.1898420575 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
16 Hb_126216_010 0.1903095499 - - PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
17 Hb_001951_270 0.1904046371 - - -
18 Hb_003988_040 0.1907163123 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
19 Hb_000367_030 0.1928631639 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
20 Hb_003226_220 0.1932318822 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]

Gene co-expression network

sample Hb_004421_020 Hb_004421_020 Hb_009659_010 Hb_009659_010 Hb_004421_020--Hb_009659_010 Hb_023732_060 Hb_023732_060 Hb_004421_020--Hb_023732_060 Hb_000656_340 Hb_000656_340 Hb_004421_020--Hb_000656_340 Hb_000275_130 Hb_000275_130 Hb_004421_020--Hb_000275_130 Hb_021924_010 Hb_021924_010 Hb_004421_020--Hb_021924_010 Hb_006541_020 Hb_006541_020 Hb_004421_020--Hb_006541_020 Hb_001951_270 Hb_001951_270 Hb_009659_010--Hb_001951_270 Hb_126216_010 Hb_126216_010 Hb_009659_010--Hb_126216_010 Hb_009659_010--Hb_021924_010 Hb_003988_040 Hb_003988_040 Hb_009659_010--Hb_003988_040 Hb_000975_250 Hb_000975_250 Hb_009659_010--Hb_000975_250 Hb_023732_060--Hb_000656_340 Hb_023732_060--Hb_021924_010 Hb_003226_220 Hb_003226_220 Hb_023732_060--Hb_003226_220 Hb_000975_180 Hb_000975_180 Hb_023732_060--Hb_000975_180 Hb_023732_060--Hb_003988_040 Hb_023386_010 Hb_023386_010 Hb_023732_060--Hb_023386_010 Hb_140543_010 Hb_140543_010 Hb_000656_340--Hb_140543_010 Hb_006995_040 Hb_006995_040 Hb_000656_340--Hb_006995_040 Hb_020035_020 Hb_020035_020 Hb_000656_340--Hb_020035_020 Hb_130235_010 Hb_130235_010 Hb_000656_340--Hb_130235_010 Hb_000419_130 Hb_000419_130 Hb_000656_340--Hb_000419_130 Hb_000275_130--Hb_023732_060 Hb_054074_010 Hb_054074_010 Hb_000275_130--Hb_054074_010 Hb_008699_020 Hb_008699_020 Hb_000275_130--Hb_008699_020 Hb_000096_130 Hb_000096_130 Hb_000275_130--Hb_000096_130 Hb_000275_130--Hb_023386_010 Hb_021924_010--Hb_000975_180 Hb_001488_400 Hb_001488_400 Hb_021924_010--Hb_001488_400 Hb_004755_030 Hb_004755_030 Hb_021924_010--Hb_004755_030 Hb_021924_010--Hb_003226_220 Hb_021924_010--Hb_003988_040 Hb_000025_240 Hb_000025_240 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006718_010 Hb_006718_010 Hb_006541_020--Hb_006718_010 Hb_007520_060 Hb_007520_060 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_000367_030 Hb_000367_030 Hb_006541_020--Hb_000367_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08576 0.839277 1.00227 3.24763 0 3.90451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44584 9.31309 1.47467 2.09426 1.15985

CAGE analysis