Hb_004429_010

Information

Type -
Description -
Location Contig4429: 8264-14465
Sequence    

Annotation

kegg
ID cit:102611104
description probable inactive purple acid phosphatase 1-like
nr
ID AGL44409.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q9LMX4
description Probable inactive purple acid phosphatase 1 OS=Arabidopsis thaliana GN=PAP1 PE=2 SV=1
trembl
ID V9NC93
description Purple acid phosphatase OS=Manihot esculenta GN=PAP1 PE=2 SV=1
Gene Ontology
ID GO:0003993
description probable inactive purple acid phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42732: 8392-8707 , PASA_asmbl_42733: 8924-11228 , PASA_asmbl_42734: 12184-14501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_010 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_002027_280 0.0360789844 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
3 Hb_002092_070 0.0532140253 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
4 Hb_009252_050 0.0540776285 - - protein binding protein, putative [Ricinus communis]
5 Hb_003124_160 0.0549270778 - - dynamin, putative [Ricinus communis]
6 Hb_002284_170 0.0570035947 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
7 Hb_001221_090 0.0585040078 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
8 Hb_001673_050 0.0595105215 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
9 Hb_000949_020 0.0599691199 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
10 Hb_002045_250 0.0612600961 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
11 Hb_000008_240 0.0620852274 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001904_030 0.0623855757 - - PREDICTED: importin-5 [Jatropha curcas]
13 Hb_000479_240 0.0627791933 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
14 Hb_000529_060 0.0657118105 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
15 Hb_000977_300 0.0669452439 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
16 Hb_004517_020 0.0684123406 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
17 Hb_000941_030 0.0687676548 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
18 Hb_001231_090 0.0688571618 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
19 Hb_000120_910 0.0696806177 - - plant ubiquilin, putative [Ricinus communis]
20 Hb_004204_130 0.0707603396 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_004429_010 Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_009252_050 Hb_009252_050 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_002284_170 Hb_002284_170 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090 Hb_002027_280--Hb_003124_160 Hb_001904_030 Hb_001904_030 Hb_002027_280--Hb_001904_030 Hb_001673_050 Hb_001673_050 Hb_002027_280--Hb_001673_050 Hb_001277_300 Hb_001277_300 Hb_002027_280--Hb_001277_300 Hb_000352_070 Hb_000352_070 Hb_002027_280--Hb_000352_070 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_002092_070--Hb_002284_170 Hb_002092_070--Hb_001221_090 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_011202_020 Hb_011202_020 Hb_003124_160--Hb_011202_020 Hb_005402_040 Hb_005402_040 Hb_003124_160--Hb_005402_040 Hb_000261_030 Hb_000261_030 Hb_003124_160--Hb_000261_030 Hb_002284_170--Hb_000958_150 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_002284_170--Hb_009252_050 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.48047 19.6035 12.2263 13.6239 12.1047 10.9336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.45927 4.3955 5.69176 11.2746 12.1948

CAGE analysis