Hb_004429_040

Information

Type -
Description -
Location Contig4429: 23105-23400
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_040 0.0 - - -
2 Hb_001241_060 0.0468850694 - - -
3 Hb_002490_040 0.0619461856 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
4 Hb_000563_290 0.0661242462 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
5 Hb_000195_050 0.1002101484 - - -
6 Hb_010024_010 0.1193944627 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_022593_060 0.1310065725 - - -
8 Hb_038675_010 0.1388906773 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
9 Hb_059069_010 0.1399999471 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
10 Hb_011360_100 0.1565187237 - - -
11 Hb_001206_070 0.1676902775 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_004458_050 0.1703238122 - - -
13 Hb_005741_010 0.1750011892 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
14 Hb_004317_050 0.1873814841 - - -
15 Hb_012194_010 0.1874023139 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_001385_050 0.1938848445 - - catalytic, putative [Ricinus communis]
17 Hb_006275_030 0.2091931221 - - -
18 Hb_000574_020 0.2121982422 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001762_070 0.2184904684 - - -
20 Hb_002463_080 0.2198037466 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_004429_040 Hb_004429_040 Hb_001241_060 Hb_001241_060 Hb_004429_040--Hb_001241_060 Hb_002490_040 Hb_002490_040 Hb_004429_040--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_004429_040--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_004429_040--Hb_000195_050 Hb_010024_010 Hb_010024_010 Hb_004429_040--Hb_010024_010 Hb_022593_060 Hb_022593_060 Hb_004429_040--Hb_022593_060 Hb_001241_060--Hb_010024_010 Hb_001241_060--Hb_022593_060 Hb_001241_060--Hb_002490_040 Hb_001241_060--Hb_000563_290 Hb_001206_070 Hb_001206_070 Hb_001241_060--Hb_001206_070 Hb_002490_040--Hb_000563_290 Hb_002490_040--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_002490_040--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_002490_040--Hb_059069_010 Hb_000563_290--Hb_000195_050 Hb_000563_290--Hb_038675_010 Hb_000563_290--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_000563_290--Hb_011360_100 Hb_000195_050--Hb_038675_010 Hb_000195_050--Hb_059069_010 Hb_000195_050--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000195_050--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000195_050--Hb_005741_010 Hb_010024_010--Hb_022593_060 Hb_010024_010--Hb_001206_070 Hb_001385_050 Hb_001385_050 Hb_010024_010--Hb_001385_050 Hb_000116_080 Hb_000116_080 Hb_010024_010--Hb_000116_080 Hb_022593_060--Hb_001206_070 Hb_022593_060--Hb_001385_050 Hb_022593_060--Hb_000116_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.793926 0 0 0 0 3.60864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis