Hb_004429_070

Information

Type -
Description -
Location Contig4429: 44303-47436
Sequence    

Annotation

kegg
ID rcu:RCOM_1620540
description protein with unknown function (EC:1.3.1.74 2.7.11.22)
nr
ID XP_012067787.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
swissprot
ID Q9S7I6
description LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=2 SV=1
trembl
ID A0A067KYU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15719 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42738: 44058-44366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_070 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
2 Hb_002756_020 0.0792460458 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
3 Hb_002290_040 0.0955150887 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011360_080 0.1200924845 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_004324_050 0.1324402124 - - PREDICTED: spermine synthase [Jatropha curcas]
6 Hb_000327_220 0.1369192345 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
7 Hb_000141_030 0.1373794615 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
8 Hb_002078_480 0.1383336395 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
9 Hb_006816_450 0.1408637469 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003147_050 0.1464646069 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_001053_150 0.1472046116 - - -
12 Hb_001035_070 0.1498117174 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
13 Hb_001959_160 0.1514184916 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
14 Hb_001153_220 0.1526890495 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
15 Hb_005188_090 0.1530425993 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
16 Hb_001159_080 0.153605353 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
17 Hb_003551_050 0.1547905321 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
18 Hb_000161_150 0.1550438765 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
19 Hb_029510_040 0.1578762081 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
20 Hb_007429_030 0.158890149 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004429_070 Hb_004429_070 Hb_002756_020 Hb_002756_020 Hb_004429_070--Hb_002756_020 Hb_002290_040 Hb_002290_040 Hb_004429_070--Hb_002290_040 Hb_011360_080 Hb_011360_080 Hb_004429_070--Hb_011360_080 Hb_004324_050 Hb_004324_050 Hb_004429_070--Hb_004324_050 Hb_000327_220 Hb_000327_220 Hb_004429_070--Hb_000327_220 Hb_000141_030 Hb_000141_030 Hb_004429_070--Hb_000141_030 Hb_002756_020--Hb_002290_040 Hb_002756_020--Hb_000327_220 Hb_006816_450 Hb_006816_450 Hb_002756_020--Hb_006816_450 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_003551_050 Hb_003551_050 Hb_002756_020--Hb_003551_050 Hb_001959_160 Hb_001959_160 Hb_002290_040--Hb_001959_160 Hb_003147_050 Hb_003147_050 Hb_002290_040--Hb_003147_050 Hb_003943_030 Hb_003943_030 Hb_002290_040--Hb_003943_030 Hb_001153_220 Hb_001153_220 Hb_002290_040--Hb_001153_220 Hb_000477_080 Hb_000477_080 Hb_011360_080--Hb_000477_080 Hb_011360_080--Hb_002290_040 Hb_000368_060 Hb_000368_060 Hb_011360_080--Hb_000368_060 Hb_011360_080--Hb_000141_030 Hb_011360_080--Hb_002756_020 Hb_004324_050--Hb_002290_040 Hb_000103_110 Hb_000103_110 Hb_004324_050--Hb_000103_110 Hb_004324_050--Hb_000368_060 Hb_012423_050 Hb_012423_050 Hb_004324_050--Hb_012423_050 Hb_001762_060 Hb_001762_060 Hb_004324_050--Hb_001762_060 Hb_011030_020 Hb_011030_020 Hb_000327_220--Hb_011030_020 Hb_001159_080 Hb_001159_080 Hb_000327_220--Hb_001159_080 Hb_005224_010 Hb_005224_010 Hb_000327_220--Hb_005224_010 Hb_000327_220--Hb_003551_050 Hb_000789_220 Hb_000789_220 Hb_000327_220--Hb_000789_220 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_000141_030--Hb_004324_050 Hb_000141_030--Hb_000368_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.938767 0.419502 0.0775693 0.67773 0.733519 1.40544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50539 2.25109 7.70241 1.17158 0.386318

CAGE analysis